View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_32 (Length: 235)
Name: NF14337_low_32
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 47051223 - 47051009
Alignment:
| Q |
6 |
tggacatcatcatattcaaaattaatttgtgtctattgcactttgccacccaatatctttccaaaaataagtttgtaagatgttatgatttgcattcgat |
105 |
Q |
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| T |
47051223 |
tggacatccttatattcaaaattaatttgtgtctattgcactttgccacccaatatctttccaaatataactttgtaagatgttatgatttgcattcgat |
47051124 |
T |
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| Q |
106 |
ggtacattaatatcattcatgttctgttttaatgttgacaggttttagctccagagttctttgaaaatcaaaaagatattagggatgttgagatattatc |
205 |
Q |
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| T |
47051123 |
ggtacattaatatcattcatgttctgttttaatgttgacagtttttagctccagagttctttgaaaatcaaaaagatattagggatgttgagatattatc |
47051024 |
T |
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| Q |
206 |
tcatcatgatataag |
220 |
Q |
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|||| |||||||||| |
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| T |
47051023 |
tcatgatgatataag |
47051009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 48106098 - 48106063
Alignment:
| Q |
174 |
caaaaagatattagggatgttgagatattatctcat |
209 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
48106098 |
caaaaagatattagggatgttgaaatattatctcat |
48106063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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