View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_36 (Length: 211)
Name: NF14337_low_36
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_36 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 18284 - 18104
Alignment:
| Q |
16 |
aagaaacaaaacacaaacactatcagttagctaaagaatcttaggtgtaataatgtacaaatcaaagtactcacccctcaaaacattgttcactgcagcg |
115 |
Q |
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| T |
18284 |
aagaaacaaaacacaaacactatcagttagctaaagaatcttaggtgtaataatgtacaaatcaaagtactcacccctcaaaacattattcactgcagcg |
18185 |
T |
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| Q |
116 |
acgtacaaagtcatcagtatagcttccaaaaatactatcaagacgcttcactacgatgggaatatcctctggaggtagtat |
196 |
Q |
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| T |
18184 |
acgtacaaagtcatcagtatagcttccaaaaatactatcaagaagcttcactactatgggaatatcctctggaggtagtat |
18104 |
T |
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Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 34605263 - 34605419
Alignment:
| Q |
40 |
agttagctaaagaatcttaggtgtaataatgtacaaatcaaagtactcacccctcaaaacattgttcactgcagcgacgtacaaagtcatcagtatagct |
139 |
Q |
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|||||||||||| | |||||||||||||| |||||||||||||||| |||| ||||||| ||| |||||| |||||| || ||| |||||||||||||| |
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| T |
34605263 |
agttagctaaagtaacttaggtgtaataaaatacaaatcaaagtacttacccttcaaaacgttgctcactgaagcgacttataaaatcatcagtatagct |
34605362 |
T |
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| Q |
140 |
tccaaaaatactatcaagacgcttcactacgatgggaatatcctctggaggtagtat |
196 |
Q |
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| T |
34605363 |
ttcaaaaatactatctagacgcttcagtactttaggaatatcctccggaggcagtat |
34605419 |
T |
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