View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_5 (Length: 439)
Name: NF14337_low_5
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Complemental strand, 21121622 - 21121221
Alignment:
| Q |
21 |
tctaatactacgggagaataaactattttgggattgttgaaaaatgtcaaaatgccaaatttttgtttgtacacnnnnnnnnngaacaatttttgtttgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21121622 |
tctaatactacgggagaataaactattttgggattgttgaaaaatgtcaaaatgccaaatttttgtttgtacactttttttttgaacaatttttgtttgt |
21121523 |
T |
|
| Q |
121 |
acacttaaaggcatcaactataaaatttaagcagcagattagaacatagatatatgattaatgtatgagtgtatatatatagaatgggactggggaagct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21121522 |
acacttaaaggcatcaactataaaatttaagcagcagattagaacatagatatatgattaatgtatgagtgtatatatatagaatgggactggggaagct |
21121423 |
T |
|
| Q |
221 |
tcatacctttcttggagaggaattctcaataagcagtactcagtctgttggcttagctaagttgagaaacggatgctagaaggataattgtgtggtgttt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21121422 |
tcatacctttcttggagaggaattctcaataagcagtactcagtctgttggcttagctaagttgagaaacggatgctagaaggataattgtgtggtgttt |
21121323 |
T |
|
| Q |
321 |
ttgcactttatccttagacataagatattattattgcnnnnnnnnnngttggaaaggataatatgatattattgtttggtcacagttctccttgctcttc |
420 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21121322 |
ttgcactttatccttagacataagatattattattgcttttttttttgttggaaaggataatatgatattattgtttggtcacagttctccttgctcttc |
21121223 |
T |
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| Q |
421 |
cc |
422 |
Q |
| |
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|| |
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| T |
21121222 |
cc |
21121221 |
T |
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