View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_6 (Length: 439)
Name: NF14337_low_6
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 40121565 - 40121968
Alignment:
| Q |
19 |
agtgatacatgtaaaaattgggcttcaattgacaacataataaaggtgttgtagtcaaaggaaaggtgttgtagtcaaattcggtagaatacaaatgaag |
118 |
Q |
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| T |
40121565 |
agtgatacatgtaaaaattgggcttcaattaacaaaataataaaggtgttgtagtcaaaggaaaggtgttgtagtcaaatttggtagaatacaaatgaag |
40121664 |
T |
|
| Q |
119 |
gaacgcattgcaattagttgcggatgaattgaattaagtagagagtttcggaatagataaattcaaatgtggttccttaattagataacacatggattgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40121665 |
gaacgcattgcaattagttgcggatgaattgaattaagtagagagtttcggtatggataaattcaaatgtggttccttaattagataacacatggattgt |
40121764 |
T |
|
| Q |
219 |
tgtgtgtgtttacaaatgctaagatgatgtttcacaataggctctctcatttagatgaaattcacactcacctaaaagaggttgcaattcgacgatgaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40121765 |
tgtgtgtgtttacaaatgctaagatgatgtttcacaataggctcactcatttagatgaaattcacactcacctaaaagaggttgcaattcgacgatgaca |
40121864 |
T |
|
| Q |
319 |
ttgttcttaaagaatgtcgtccaaagtaaacaaagtaaggaaagagagacaatcaacatatattgattcattatccattgatagctagtttagtccccct |
418 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40121865 |
ttgttcttaaagaatgtcgtc---------caaagtaaggaaagagagacaatcaacatatattgattcattatccattgatagctagtttagtccacct |
40121955 |
T |
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| Q |
419 |
ctaacatgatgat |
431 |
Q |
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||||||| ||||| |
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| T |
40121956 |
ctaacataatgat |
40121968 |
T |
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