View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_7 (Length: 427)
Name: NF14337_low_7
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 45100514 - 45100940
Alignment:
| Q |
5 |
tacactttgaattaaaaaatatgtttagtatccgatatgtgttggtatatgacaatgatataacattgtcattgttatt------ttaatgtttgtgtct |
98 |
Q |
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| T |
45100514 |
tacactttgaattaaaaaatatgtttagtatccgacatgtgttggtatatgacaatgatataacattgtcattgttattgttattttaatgtttgtgtct |
45100613 |
T |
|
| Q |
99 |
atgtctatgtttcattgctcgtatcttattatttattatacatgg--aaatttgttgaaaaatttgcat-----------tttgccaaccaaacatccca |
185 |
Q |
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| T |
45100614 |
atgtctatgttttattgctcgtatcttattatttgttatacatggaaaaattgcataagtaatatatatatatcaaagtatttgccaaccagacatccca |
45100713 |
T |
|
| Q |
186 |
ctatgatggtagtttacagatcacactcagaggttgatgttagcatcaatttccttagcttagataagatgatggacctttgtaactaaagccaccaatt |
285 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45100714 |
ctatgatagtagtttgcagatcacactcagaggttgatgttagcatcaatttcctgagcttagataagatgatggacctttgtaactaaagccaccaatt |
45100813 |
T |
|
| Q |
286 |
ggcaaagcatatatagtgtatgtgtcgctcaatccttatctggggaaatagtagggtactgttattaattctcattatctggtgcatgccagcttcacat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45100814 |
ggcaaagcatatatagtgtatgtgtcgctcaatccttatctggggaaatagtagggtactgttattaattctcattatctggtgcatgccagcttcacat |
45100913 |
T |
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| Q |
386 |
aaggcagtgcctgattaatttattctt |
412 |
Q |
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| T |
45100914 |
aaggcagtgcctgattaatttattctt |
45100940 |
T |
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