View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_9 (Length: 420)
Name: NF14337_low_9
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 9786741 - 9786359
Alignment:
| Q |
8 |
aatggcaagcattaagggagcatgtgttgttttgatgatgagcatcattgttgcacctatggctgaagctgcaatctcatgtggaacagtaactggtgct |
107 |
Q |
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|||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
9786741 |
aatggcaagcatgaaggtagcatgtgttcttttgatgatgtgcatcattgttgcacctatggctgaagctgcaatcacatgtggaacagtaactggttct |
9786642 |
T |
|
| Q |
108 |
cttgctccatgcattggttatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagtaccacgcctg |
207 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
9786641 |
cttgctccatgcattggatatcttaaaggtggttctggtccatctgcagcatgctgtggtggagtcaagagacttaacagtgccgccactaccacgcctg |
9786542 |
T |
|
| Q |
208 |
accgtcaggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatgtggtgttaa |
307 |
Q |
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| T |
9786541 |
accgtcaggctgcttgcaactgcttgaaaagtgctgctggtgctatttctggtttgaatcctaacatagctgctggtctccctggcaaatgtggtgttaa |
9786442 |
T |
|
| Q |
308 |
cattccctacaagatcagtacctctaccaactgtgctacgtatgtgttataactttcccttttatatgtcatacttcctccgt |
390 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
9786441 |
cattccatacaagatcagtacctctaccaactgtgctacgtatgtgttgtaactttcccttttatatgtcatactccctccgt |
9786359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 352
Target Start/End: Original strand, 9831929 - 9832278
Alignment:
| Q |
3 |
aaaacaatggcaagcattaagggagcatgtgttgttttgatgatgagcatcattgttgcacctatggctgaagctgcaatctcatgtggaacagtaactg |
102 |
Q |
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| T |
9831929 |
aaaaaaatggcaagcatgaaggtagcatgtgttgttttgatgatgtgcatgattgttgcacctatggcagatgctgcaatctcatgtggaacagtaacta |
9832028 |
T |
|
| Q |
103 |
gtgctcttgctccatgcattggttatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagtaccac |
202 |
Q |
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| T |
9832029 |
gtgctcttggtccatgcattggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgccaccac |
9832128 |
T |
|
| Q |
203 |
gcctgaccgtcaggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatgtggt |
302 |
Q |
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| T |
9832129 |
acctgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaatacagctgcagcttctgctctccctggcaaatgtggt |
9832228 |
T |
|
| Q |
303 |
gttaacattccctacaagatcagtacctctaccaactgtgctacgtatgt |
352 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9832229 |
gttaacattccatacaagatcagtacctctaccaactgtgctacgtatgt |
9832278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 9812650 - 9812299
Alignment:
| Q |
1 |
gaaaaacaatggcaagcattaagggagcatgtgttgttttgatgatgagcatcattgttgcacctatggctgaagctgcaatctcatgtggaacagtaac |
100 |
Q |
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||||||||||||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
9812650 |
gaaaaacaatggcaaacatgaagatagcatgtgttgttttgatgatgtgcatgattgttgcacctatggcagatgctgcaatctcatgtggaacagtaac |
9812551 |
T |
|
| Q |
101 |
tggtgctcttgctccatgcattggttatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagtacc |
200 |
Q |
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| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9812550 |
tagtgctcttggtccatgcattggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgccacc |
9812451 |
T |
|
| Q |
201 |
acgcctgaccgtcaggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatgtg |
300 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||| | || |||||||||||| | ||||||||| | |||| ||| ||||||||||||||||| |
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| T |
9812450 |
acacctgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaataccgctgcagcttctgctctccctggcaaatgtg |
9812351 |
T |
|
| Q |
301 |
gtgttaacattccctacaagatcagtacctctaccaactgtgctacgtatgt |
352 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
9812350 |
gtgttaacattccatacaagatcagtacctccaccaactgtgctacgtatgt |
9812299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 113 - 358
Target Start/End: Complemental strand, 10137314 - 10137069
Alignment:
| Q |
113 |
tccatgcattggttatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagtaccacgcctgaccgt |
212 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||| |||| |||||| | |||||||| ||| |||| ||| |
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| T |
10137314 |
tccatgcattacttatcttcaaggtggtcctggtccatctgcagcatgctgtggtggagtgaagaaacttaatgctgccgccaacaccggccctgcccgc |
10137215 |
T |
|
| Q |
213 |
caggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatgtggtgttaacattc |
312 |
Q |
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|||||||||||||||||||||||| |||||||||| | ||| || |||||||| ||| |||||||| ||| |||||||||||||||||||| |||| |
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| T |
10137214 |
aaggctgcttgcaactgcttgaaaagtgctgctggtaccattgctcgtttgaataacaaccaagctgctgctcttcctggcaaatgtggtgttaaaattc |
10137115 |
T |
|
| Q |
313 |
cctacaagatcagtacctctaccaactgtgctacgtatgtgttata |
358 |
Q |
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|||| ||| | || || |||||||||||| || |||||| ||||| |
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| T |
10137114 |
cctataagtttagcacttctaccaactgtaataggtatgttttata |
10137069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 112 - 358
Target Start/End: Complemental strand, 10150801 - 10150555
Alignment:
| Q |
112 |
ctccatgcattggttatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagtaccacgcctgaccg |
211 |
Q |
| |
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||||||| ||| ||||||| |||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||| || | ||| |
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| T |
10150801 |
ctccatgtattacttatcttcaaggtggtcctggtccatctgcagcatgctgtggtggagtgaagaaacttaacggtgccgccaacaccggccccgcccg |
10150702 |
T |
|
| Q |
212 |
tcaggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatgtggtgttaacatt |
311 |
Q |
| |
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|| ||||||||||||||||||||| ||||||||| ||| || | |||||| ||| |||||||| |||||||||||||||||||||||||||| |
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| T |
10150701 |
caagactgcttgcaactgcttgaaaagggctgctggtaacattgctcgcttgaataacaaccaagctgctgctctccctggcaaatgtggtgttaacatt |
10150602 |
T |
|
| Q |
312 |
ccctacaagatcagtacctctaccaactgtgctacgtatgtgttata |
358 |
Q |
| |
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||||| ||| | || || |||||||||||| || |||||| ||||| |
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| T |
10150601 |
ccctataagtttagcacttctaccaactgtaataggtatgttttata |
10150555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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