View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14338_high_2 (Length: 935)
Name: NF14338_high_2
Description: NF14338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14338_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 6e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 48393109 - 48393225
Alignment:
| Q |
106 |
tatttgtgttttctccaaatgtttgcttaattcatatgaatatttacgttaaaatgctattttgtgttattgaagcataagttaaaaaatcaaatatgaa |
205 |
Q |
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| T |
48393109 |
tatttgtgttttctccaaatttttgcttaattcatatgaatatttacgttaaaatgctattttgtgttatagaagcataagttaaaaaatcaaatatgaa |
48393208 |
T |
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| Q |
206 |
agttctttttaaaagtt |
222 |
Q |
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| T |
48393209 |
agttgtttttaaaagtt |
48393225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 48393046 - 48393140
Alignment:
| Q |
11 |
catagggcaattataatttgcaaatattaggatgcttcaaattagttttagtatataatggtatatttgtgttttctccaaatttttgcttaatt |
105 |
Q |
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| T |
48393046 |
catagggcaattataatttgtaaatactaggatgcttcaaatttgttttagtatataatggtatatttgtgttttctccaaatttttgcttaatt |
48393140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 851 - 919
Target Start/End: Original strand, 48393246 - 48393315
Alignment:
| Q |
851 |
tttattttctt-ggctccgagaagctgaacattacaagcaggcatgtttgcataatcgattgggtgatgt |
919 |
Q |
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| T |
48393246 |
tttattttctttggctccgagaagctgaacattacaagcaggcatgtttgcataatcgattgggtgatgt |
48393315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 788 - 901
Target Start/End: Original strand, 13857395 - 13857502
Alignment:
| Q |
788 |
gtttgctctaagtaactaacatgaaattgcgatgttgcagtggagaaaccttctccagcaagatttattttcttggctccgagaagctgaacattacaag |
887 |
Q |
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| T |
13857395 |
gtttgctcgatgtaaccgacatgaaattgtgacgttgcagtggagaacccg------gcgagattttttttcttggctcctagaagctgaacattacagg |
13857488 |
T |
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| Q |
888 |
caggcatgtttgca |
901 |
Q |
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| T |
13857489 |
caggcatctttgca |
13857502 |
T |
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