View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14338_high_3 (Length: 664)
Name: NF14338_high_3
Description: NF14338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14338_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 28313020 - 28313502
Alignment:
| Q |
18 |
agtcctggtgttggagtttcatttttcattgcaccatatcactcgaagat-------tct----------gatatcttggtcttgtgagtcccgagactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |
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| T |
28313020 |
agtcctggtgttggagtttcatttttcattgcaccatatcactcgaagatatcagaatcttcgagtgatgggtatcttggtcttgtgagtcccgagactg |
28313119 |
T |
|
| Q |
101 |
tttttaatacctttcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattc |
200 |
Q |
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| T |
28313120 |
tttttaatacctttcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattc |
28313219 |
T |
|
| Q |
201 |
aagtagttcggtaacaatggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctaccgttagttacgaggcactttcacaccag |
300 |
Q |
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| T |
28313220 |
aagtagttcggtaacaatggtaaaatggggaattgacaacgttgtgaactttttaacaccggtggttgctaccgttagttacgaggcactttcacaccag |
28313319 |
T |
|
| Q |
301 |
ttaaatgtagatgtaagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagttctgcccgacggggttagcgttgggttct |
400 |
Q |
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| T |
28313320 |
ttaaatgtagatttaagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagttctgcccgacggggttagcgttgggttct |
28313419 |
T |
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| Q |
401 |
ctggagtcacgggacgaatggttgaaacactcgagattctttcttggactttcagctctaacttgtattagaattaaattatg |
483 |
Q |
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| T |
28313420 |
ctggagtcacgggacgaatggttgaaacactcgagattctttcttggactttcagctctaacttgtattagaattaaattatg |
28313502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 73 - 477
Target Start/End: Original strand, 28316232 - 28316636
Alignment:
| Q |
73 |
tatcttggtcttgtgagtcccgagactgtttttaatacctttcaaaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacag |
172 |
Q |
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| T |
28316232 |
tatcttggccttttcagtcctgagactgcttttaatagccttcaaaatcaaattgttgccgttgaatttgatacgtttgcaaatgagtgggacccaccat |
28316331 |
T |
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| Q |
173 |
ttgcgcatgtgggtatttatgtaaattcaagtagttcggtaacaatggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctac |
272 |
Q |
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| T |
28316332 |
atgcgcatgtgggtattaatataaattccattcgttcgctacaaacggaaagatggggaattgagagtggtgataacgttttaacaacggtggttgctac |
28316431 |
T |
|
| Q |
273 |
cgttagttacgaggcactttcacaccagttaaatgtagatgtaagttccttgaatggaactaaaattagcctctctcatgaaattgatttgagggaagtt |
372 |
Q |
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| T |
28316432 |
aattaattatgatgctctttcacaaaggttaagcgttgttgtaaattcggtgaatagaactacaattagcctttcagaggtgattgatttgagggcattt |
28316531 |
T |
|
| Q |
373 |
ctgcccgacggggttagcgttgggttctctggagtcacgggacgaatggttgaaacactcgagattctttcttggactttcagctctaacttgtattaga |
472 |
Q |
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| T |
28316532 |
ctgccggaatgggttatcgttgggttctctggtgccacgggaggatttgttgaaacacacaagattctttcttggaatttcaactctagcaagaattaga |
28316631 |
T |
|
| Q |
473 |
attaa |
477 |
Q |
| |
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||||| |
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| T |
28316632 |
attaa |
28316636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 589 - 660
Target Start/End: Original strand, 28313642 - 28313713
Alignment:
| Q |
589 |
agagtgtttcggaagcaatcgttaacaagacccttagattaaataagaaaagtattttttgcatcatttttg |
660 |
Q |
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| T |
28313642 |
agagtgtttcggaagcaattgttaacaagacccttggattaaataagaaaagtactttttgcatcatttttg |
28313713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 357 - 459
Target Start/End: Original strand, 28320823 - 28320925
Alignment:
| Q |
357 |
tgatttgagggaagttctgcccgacggggttagcgttgggttctctggagtcacgggacgaatggttgaaacactcgagattctttcttggactttcagc |
456 |
Q |
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||||||||||| | |||||| || || ||| |||||||||||| || | ||||||| || |||||||||||| | ||||||||||||||||||||||| |
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| T |
28320823 |
tgatttgaggggatatctgcctgattggattatcgttgggttctccggtgccacgggaggattggttgaaacacacaagattctttcttggactttcagc |
28320922 |
T |
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| Q |
457 |
tct |
459 |
Q |
| |
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||| |
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| T |
28320923 |
tct |
28320925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 281
Target Start/End: Original strand, 28320583 - 28320747
Alignment:
| Q |
117 |
aaatcaaattgttgcagttgaattcgacacctttcaaaatgagctggaccatacagttgcgcatgtgggtatttatgtaaattcaagtagttcggtaaca |
216 |
Q |
| |
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||||||||||||||||||||||||||| || ||| ||||||| ||||| || |||||||||||||||| ||| |||||| | |||| | |||| |
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| T |
28320583 |
aaatcaaattgttgcagttgaattcgatacgtttgcaaatgagtgggacccaccatatgcgcatgtgggtattaatgcaaattccatccgttccgaaaca |
28320682 |
T |
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| Q |
217 |
atggtaaaatggggaattgacaatgttgtgaactttttaactccggtggttgctaccgttagtta |
281 |
Q |
| |
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| || | |||||||||||| | ||||| || | |||| | ||||||||||||| |||||||| |
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| T |
28320683 |
acggagagatggggaattgatagtgttgagagcaatttatcaacggtggttgctacagttagtta |
28320747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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