View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14338_high_8 (Length: 281)
Name: NF14338_high_8
Description: NF14338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14338_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 23827294 - 23827206
Alignment:
| Q |
166 |
ttagtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggttgtttatatgtagggaactaatat |
254 |
Q |
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| T |
23827294 |
ttagtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggtggtttatatgtagggaactaatat |
23827206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 23827443 - 23827370
Alignment:
| Q |
18 |
gcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgattgtgaattgaaactc |
91 |
Q |
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| T |
23827443 |
gcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgattgtgaattgaaactc |
23827370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 23831338 - 23831253
Alignment:
| Q |
169 |
gtaatgaagttcaaggaaggatatagacaagagaaaaagcaaggaggagagctgaaaaaggttgtttatatgtagggaactaatat |
254 |
Q |
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| T |
23831338 |
gtaatgaagttcaaggaagaatataaagaagaaaaacaggaaggaggagaggtgaagaagagtgttgatatgtagagaactaatat |
23831253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 23823581 - 23823522
Alignment:
| Q |
18 |
gcctgtagatcacaacaacaaagcagagaaggtcaactccaaaagaaatgactcatgatt |
77 |
Q |
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| T |
23823581 |
gcctatagatcacaacaacaaagtagagaaggtcatatccaacagaaatgaaccatgatt |
23823522 |
T |
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