View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14338_low_4 (Length: 577)

Name: NF14338_low_4
Description: NF14338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14338_low_4
NF14338_low_4
[»] chr4 (10 HSPs)
chr4 (86-360)||(4598411-4598685)
chr4 (118-348)||(4622957-4623189)
chr4 (431-564)||(4598789-4598922)
chr4 (85-349)||(25015643-25015907)
chr4 (441-564)||(4623302-4623425)
chr4 (188-349)||(25037026-25037187)
chr4 (21-81)||(4597900-4597960)
chr4 (452-562)||(25016030-25016140)
chr4 (452-562)||(25037313-25037423)
chr4 (468-509)||(25002270-25002311)
[»] chr2 (2 HSPs)
chr2 (83-348)||(18805805-18806070)
chr2 (441-544)||(18805598-18805701)
[»] chr5 (1 HSPs)
chr5 (251-335)||(30363051-30363135)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 86 - 360
Target Start/End: Original strand, 4598411 - 4598685
Alignment:
Q  86 aagaaaaccaatgcaagattaaagttgctcttgattaatgaccaagctcatatagtattattggtggtcatgattacatacatcaagctctaattctgag 185  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  4598411 aagaaaaccaatgcaagattatagtttctcttgattaatgaccaaactcatattgttttattggtggtcatgattacatacatcaagctctaattctgag 4598510  T
Q  186 gtttttcaagaaacttcctaaaccaacgggcagagagcttagggtgccttttaagatcattctcataatcaacaaagttaattccaaaacgtacagtgta 285  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  4598511 gtttttcaagaaatttcctaaaccaacgggcagagagcttagggtgtcttttaagatcattctcataatcaacaaagttaattccaaaacgcacggtgta 4598610  T
Q  286 tccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcacattcacaccactcctacacac 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4598611 tccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcacattcacaccacgcctacacac 4598685  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 118 - 348
Target Start/End: Original strand, 4622957 - 4623189
Alignment:
Q  118 gattaatgaccaagctcatatagtattattggtggtcatgattacatacatcaagctctaattctgaggtttttcaagaaacttcctaaaccaacgggca 217  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||| |||||| |  ||||||| |   | || |||||||||||||||||| ||||||    
T  4622957 gattaatgaccaagctcacacagtattattggtggtcatgatgacatgcatcaaccaataattct-attatgttgaagaaacttcctaaaccaccgggca 4623055  T
Q  218 gagagcttagggtgccttttaagat---cattctcataatcaacaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaa 314  Q
    |||||||||||||| ||| ||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  4623056 gagagcttagggtgtcttgtaagatgaccattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattcaaagttgtccaaaa 4623155  T
Q  315 gggaccatgcaaaatatccttgcacattcacacc 348  Q
    |||||||||||||||||||||| || ||||||||    
T  4623156 gggaccatgcaaaatatccttgtaccttcacacc 4623189  T

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Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 431 - 564
Target Start/End: Original strand, 4598789 - 4598922
Alignment:
Q  431 tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtga 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  4598789 tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctcttcgagtga 4598888  T
Q  531 cagcgttgaatcattgtcctcgttcatacctatg 564  Q
    ||||||||||||||||||||||||||||||||||    
T  4598889 cagcgttgaatcattgtcctcgttcatacctatg 4598922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 85 - 349
Target Start/End: Original strand, 25015643 - 25015907
Alignment:
Q  85 taagaaaaccaatgcaagattaaagttgctcttgattaatgaccaagctcatatagtattattggtggtcatgattacatacatcaagctctaattctga 184  Q
    |||| |||| ||| ||| |||||||| | |||||||||||||||||| ||||||  ||||||||| | | || || |||||||||||| | |||  ||      
T  25015643 taaggaaactaattcaaaattaaagtagttcttgattaatgaccaagttcatatcatattattggggattatcatgacatacatcaagttgtaacactag 25015742  T
Q  185 ggtttttcaagaaacttcctaaaccaacgggcagagagcttagggtgccttttaagatcattctcataatcaacaaagttaattccaaaacgtacagtgt 284  Q
     |||| | |||||| |||||||||||| |||||||||||||  |||| |||||||||| ||  |  |||| |||| |||| ||||||||||||  |||||    
T  25015743 tgtttcttaagaaagttcctaaaccaatgggcagagagcttttggtgtcttttaagattatcattgtaattaacatagttcattccaaaacgtctagtgt 25015842  T
Q  285 atccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcacattcacacca 349  Q
    ||||  |   ||||||||||||||||||||| |||||||||||||||||||| || |||||||||    
T  25015843 atccagccagccattcaaagttgtccaaaagtgaccatgcaaaatatccttgtactttcacacca 25015907  T

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Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 441 - 564
Target Start/End: Original strand, 4623302 - 4623425
Alignment:
Q  441 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa 540  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |    
T  4623302 agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga 4623401  T
Q  541 tcattgtcctcgttcatacctatg 564  Q
    |||||| | || ||||||||||||    
T  4623402 tcattgacttcattcatacctatg 4623425  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 188 - 349
Target Start/End: Original strand, 25037026 - 25037187
Alignment:
Q  188 ttttcaagaaacttcctaaaccaacgggcagagagcttagggtgccttttaagatcattctcataatcaacaaagttaattccaaaacgtacagtgtatc 287  Q
    |||| |||||| |||||||||||| ||||||| |||||  |||| |||||||||| ||  |  ||||| |||||||||||||||||||||    ||||||    
T  25037026 tttttaagaaaattcctaaaccaatgggcagaaagcttttggtgtcttttaagattatctttgtaatctacaaagttaattccaaaacgtcttctgtatc 25037125  T
Q  288 cgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcacattcacacca 349  Q
    || |   ||||||||||||||| ||||| |||||||||||||||||||| || |||||||||    
T  25037126 cggccagccattcaaagttgtctaaaagtgaccatgcaaaatatccttgtactttcacacca 25037187  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 4597900 - 4597960
Alignment:
Q  21 attcaatcacttgtcataattggaatcaacttgttaatgattaaaaataaacgcaactata 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  4597900 attcaatcacttgtcataattggaatcaacttgttaatgattaaaaataaacacaattata 4597960  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
Q  452 tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc 551  Q
    |||||||||| ||||||||||| ||||| |||||| ||||||||||||||| ||||||||| || || ||||| ||||| || |||| |||||||  |||    
T  25016030 tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc 25016129  T
Q  552 gttcataccta 562  Q
    || ||||||||    
T  25016130 gtccataccta 25016140  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
Q  452 tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc 551  Q
    |||||||||| |||| |||||| ||||| |||||| ||||||| ||||||| |||||||||||| |||||||| ||||| ||||||| ||||||   |||    
T  25037313 tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc 25037412  T
Q  552 gttcataccta 562  Q
    || ||||||||    
T  25037413 gtccataccta 25037423  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 509
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
Q  468 ataatatagatgacgataatagtaatcaattctgttagtatc 509  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  25002311 ataataaagatgacgataaaagtaatcaattctgtcagtatc 25002270  T

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Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 83 - 348
Target Start/End: Complemental strand, 18806070 - 18805805
Alignment:
Q  83 attaagaaaaccaatgcaagattaaagttgctcttgattaatgaccaagctcatatagtattattggtggtcatgattacatacatcaagctctaattct 182  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||  || |||||||||||||||    |||    
T  18806070 attaagaaaaccaattaaagattaaagttgctcttgattaacgaccaagctcgtataatattattggtgatcacaatgacatacatcaagctccctctct 18805971  T
Q  183 gaggtttttcaagaaacttcctaaaccaacgggcagagagcttagggtgccttttaagatcattctcataatcaacaaagttaattccaaaacgtacagt 282  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| |   |||||||||||||||||||||||||||  ||    
T  18805970 aaggtttctcaagaaacttcctaaaccaacgggcagagagcttagggtatcttttaagattatttttgaaatcaacaaagttaattccaaaacgtaaggt 18805871  T
Q  283 gtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgcacattcacacc 348  Q
    |||||||||   ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  18805870 gtatccgtcttgccattcaaaattgtcgaaaagggaccatgcaaaatatccttgtacattcacacc 18805805  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 441 - 544
Target Start/End: Complemental strand, 18805701 - 18805598
Alignment:
Q  441 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa 540  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| | | |||||||||| | |||||||||||| || |||| |    
T  18805701 agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga 18805602  T
Q  541 tcat 544  Q
    ||||    
T  18805601 tcat 18805598  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 30363135 - 30363051
Alignment:
Q  251 taatcaacaaagttaattccaaaacgtacagtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatcctt 335  Q
    ||||| |||||||| |||||||| |  || ||||| || |||| ||||||||| |||||||| || ||||| |||||||||||||    
T  30363135 taatctacaaagttcattccaaacctcactgtgtacccttcaccccattcaaaattgtccaatagcgaccacgcaaaatatcctt 30363051  T

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