View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14338_low_5 (Length: 391)
Name: NF14338_low_5
Description: NF14338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14338_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 36 - 387
Target Start/End: Complemental strand, 32014363 - 32014013
Alignment:
| Q |
36 |
tcctccggctacctatacctcgacaattccaacttatacaattgtaggattggtgtgtcctaccttgaagcacaaattgtataagttggaactgtcgagg |
135 |
Q |
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| T |
32014363 |
tcctccggctacctatacc-cgacaattccaacttatacaattgtaggattggtgtgtcctaccttgaagaacaaattgtataagttggaactgtcgagg |
32014265 |
T |
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| Q |
136 |
actaggtagcccgagtacagttccaatctaaagcacataggacaccaagagaaatgacaaaaaggatgatgaatgtgggaatgttaggattttatttttt |
235 |
Q |
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| T |
32014264 |
attaggtagcccgagtacagttccaatctaaagcacataggacaccgagagaaatgacaaaaaggatgatgaatatgggaatgttaggattttatttttt |
32014165 |
T |
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| Q |
236 |
gtatgaaagtctgaattgttgtaaggttgtgtttgaacattacccacccacgacacacttttgatattgctcttccaggagacaaaatcccttctaatcc |
335 |
Q |
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| T |
32014164 |
gtatgagagtctgaattgttgtaaggttgtgtttgaacattacccacccacgacacactttttatattgctcttccaggagacacaatcccttctaatcc |
32014065 |
T |
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| Q |
336 |
tcccaattatttggacaacgaatatcactcataattattgagaataatatag |
387 |
Q |
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| T |
32014064 |
tcccaattatttggacaacgaatatcactcataattattgagactaagatag |
32014013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 32014766 - 32014570
Alignment:
| Q |
13 |
accacaaattatatttagaaatgtcctccggctacctatacctcgacaattccaacttatacaattgtaggattggtgtgtcctaccttgaagcacaaat |
112 |
Q |
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| T |
32014766 |
accacaaattatatttagaaatgtcctccggctacctatacctcgacaattccaacttatacaattgtaggattggtgtgtccta-cttaaagaacaatt |
32014668 |
T |
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| Q |
113 |
tgtataagttggaactgtcgaggactaggtagcccgagtacagttcc-aatctaaagcacataggacaccaagagaaatgacaaaaaggatgatgaat |
209 |
Q |
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| T |
32014667 |
tgtataagttggaactgtcggggactgagtagcccaagtacagttccaaatctaaattacctaggacaccgggagaaatgacacaaaggatgatgaat |
32014570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 32014555 - 32014384
Alignment:
| Q |
39 |
tccggctacctatacctcgacaattccaacttatacaattgtaggattggtgtgtcctaccttgaagcacaaattgtataagttggaactgtcgaggact |
138 |
Q |
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| T |
32014555 |
tccggctacctataccccgacaactccaacctatacaattgtaggattggtgtgtcctaccttaaagaacgaattgtataaattggaactgtcggggact |
32014456 |
T |
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| Q |
139 |
aggtagcccgagtacagttcc-aatctaaagcacataggacaccaagagaaatgacaaaaaggatgatgaat |
209 |
Q |
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| T |
32014455 |
gggtagcccgagtacagttccaaatctaaattacctaggacaccaagagaaatgacataaagtatgatgaat |
32014384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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