View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14338_low_6 (Length: 363)
Name: NF14338_low_6
Description: NF14338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14338_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 48606592 - 48606259
Alignment:
| Q |
15 |
aagttgggttaaaagtgaactagaggataatttgacttcaaatctcttagctagatctagatggttaaagttaaataagggaggtgaaccatgtaaagat |
114 |
Q |
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| T |
48606592 |
aagttgggttaaaagtgaactagaggttaatttgacttcaaatctcttagctagatctagatggttaaagttaaataagggaggtgaaccatgtaaagat |
48606493 |
T |
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| Q |
115 |
tctaaggctgttgatatttcaattcctggcttggatggtgggaatatggtagatttatcagctggtgatatacatgaatttgttcttcaagcattggatg |
214 |
Q |
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| T |
48606492 |
tctaaggctgttgatatttcaattcctggcttggatggtgggaatatggtagatttatcagctggtgatatacatgaatttgtttttcaagcattggatg |
48606393 |
T |
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| Q |
215 |
attcggggaaggctcgatgtttaggtggtgattattttgagactgatctttcgggggaatcgtggaaatctagaccgttggtgaaagattttagcaatgg |
314 |
Q |
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| T |
48606392 |
attcgaggaaggctcgatgtttaggtggtgattattttgagactgatctttcgggggaatcgtggaaatctagaccgttggtgaaagattttagcaatgg |
48606293 |
T |
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| Q |
315 |
atcttactcgatttcgtttcaagttcatcctgat |
348 |
Q |
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| T |
48606292 |
atcttactcgatttcgcttcaagttcatcctgat |
48606259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 90 - 348
Target Start/End: Complemental strand, 48612119 - 48611855
Alignment:
| Q |
90 |
taagggaggtgaaccatgtaaagattctaaggctgttgatatttcaattcctggcttggat------ggtgggaatatggtagatttatcagctggtgat |
183 |
Q |
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||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| || | || ||||||||||||||| |
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| T |
48612119 |
taagggaggtgaaccttgtaaagattctaagactgttgagatttcaattcctgggttggatttggatggtgggaatttgattgagttatcagctggtgat |
48612020 |
T |
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| Q |
184 |
atacatgaatttgttcttcaagcattggatgattcggggaaggctcgatgtttaggtggtgattattttgagactgatctttcgggggaatcgtggaaat |
283 |
Q |
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||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
48612019 |
atacatgaatttggttttcaagcattggatgattcggggaagtctcgatgtttaggtggtgattactttgagactagtctttcgggggaatcgtggaaat |
48611920 |
T |
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| Q |
284 |
ctagaccgttggtgaaagattttagcaatggatcttactcgatttcgtttcaagttcatcctgat |
348 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
48611919 |
ctaggccgttggtgaaagattttagtaatggatcttactcgatttcacttcaagttcatcctgat |
48611855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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