View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14338_low_7 (Length: 347)
Name: NF14338_low_7
Description: NF14338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14338_low_7 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 119 - 339
Target Start/End: Original strand, 3804520 - 3804740
Alignment:
| Q |
119 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtatcttttctattaataattttaaaatactagttgatat |
218 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3804520 |
tacttcctccgatcctttataaaagagacaatttgagaaaatcacagagaccaaagaaaggtatcttttctattaataattttaaaatactagttgatat |
3804619 |
T |
|
| Q |
219 |
tccaaaaatatccttgtaccaaactactcctaccttacattctagctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatcca |
318 |
Q |
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| |||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804620 |
ttcaaaaatatccttggactaaactacttctaccttacattccagctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatcca |
3804719 |
T |
|
| Q |
319 |
agcatcacaaacacatctctc |
339 |
Q |
| |
|
||| |||||||||| |||||| |
|
|
| T |
3804720 |
agcctcacaaacacgtctctc |
3804740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 119 - 332
Target Start/End: Complemental strand, 27150024 - 27149811
Alignment:
| Q |
119 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtatcttttctattaataattttaaaatactagttgatat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
27150024 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggcattttttctattaataattttaaaatactagttgatat |
27149925 |
T |
|
| Q |
219 |
tccaaaaatatccttgtaccaaactactcctaccttacattctagctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatcca |
318 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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| T |
27149924 |
tccaaaaatatccttggactaaactactcctaccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattca |
27149825 |
T |
|
| Q |
319 |
agcatcacaaacac |
332 |
Q |
| |
|
||| |||||||||| |
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|
| T |
27149824 |
agcctcacaaacac |
27149811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 119 - 331
Target Start/End: Complemental strand, 8435496 - 8435284
Alignment:
| Q |
119 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtatcttttctattaataattttaaaatactagttgatat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
8435496 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagactaaagaaatgtattttttctattaataattttaaaatactagttgatat |
8435397 |
T |
|
| Q |
219 |
tccaaaaatatccttgtaccaaactactcctaccttacattctagctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatcca |
318 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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|
| T |
8435396 |
tccaaaaatatccttggactaaactactcctaccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattca |
8435297 |
T |
|
| Q |
319 |
agcatcacaaaca |
331 |
Q |
| |
|
||| ||||||||| |
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|
| T |
8435296 |
agcctcacaaaca |
8435284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 119 - 339
Target Start/End: Complemental strand, 5165426 - 5165214
Alignment:
| Q |
119 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtatcttttctattaataattttaaaatactagttgatat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
5165426 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacaccgaccaaggaaatgtattttttctattaataattttaaaatactagttgatat |
5165327 |
T |
|
| Q |
219 |
tccaaaaatatccttgtaccaaactactcctaccttacattctagctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatcca |
318 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| || |
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| T |
5165326 |
tccaaaaatatccttggactaaactactcctacctta--------ctgcctacaattaatgtaattctatcattaaagctattgtatgagtatcaattca |
5165235 |
T |
|
| Q |
319 |
agcatcacaaacacatctctc |
339 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
5165234 |
agcctcacaaacacacctctc |
5165214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 14555113 - 14555032
Alignment:
| Q |
34 |
aatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttttatggatactaatgaattaat |
115 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14555113 |
aatgattggttgaccctacctatcctaattatgcaccacttaattatacaccaaatgtttgtatggatactaatgaattaat |
14555032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 3817804 - 3817769
Alignment:
| Q |
119 |
tactccctccggtcctttataaaagagacaatttga |
154 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3817804 |
tactccctccgatcctttataaaagagacaatttga |
3817769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 27149097 - 27149131
Alignment:
| Q |
118 |
atactccctccggtcctttataaaagagacaattt |
152 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
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|
| T |
27149097 |
atactccctccggtcctttatacaagagacaattt |
27149131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 119 - 332
Target Start/End: Complemental strand, 31742908 - 31742703
Alignment:
| Q |
119 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtatcttttctattaataattttaaaatactagttgatat |
218 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31742908 |
tactccatctggtcctttatagaagagacaatttgagaaaatcacacagaccaagaaaatgtattttttctattaataattttaaaatactagttgatat |
31742809 |
T |
|
| Q |
219 |
tccaaaaatatccttgtaccaaactactcctaccttacattctagctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatcca |
318 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
|
|
| T |
31742808 |
tccaaaaatatccttggactaaactactccttcctta--------ccgcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattca |
31742717 |
T |
|
| Q |
319 |
agcatcacaaacac |
332 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
31742716 |
agcctcacaaacac |
31742703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 37596460 - 37596342
Alignment:
| Q |
1 |
ttttatactactttgctcaaaaataaattcataaatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttttatgga |
100 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37596460 |
ttttatattactttactcaaaaataaattcataaatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttgtatgga |
37596361 |
T |
|
| Q |
101 |
tactaatgaattaattaat |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37596360 |
tactaatgaattaattaat |
37596342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37535205 - 37535095
Alignment:
| Q |
1 |
ttttatactactttgctcaaaaataaattcataaatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttttatgga |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37535205 |
ttttatattactttgctcaaaaataaattgataaatgtttggttgaccctacatatcttaattatgcaccacttaattatacaccaaatgtttgtatgga |
37535106 |
T |
|
| Q |
101 |
tactaatgaat |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
37535105 |
tactaatgaat |
37535095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37720154 - 37720090
Alignment:
| Q |
1 |
ttttatactactttgctcaaaaataaattcataaatgtttggttgaccctacatatcttaattat |
65 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37720154 |
ttttatattactttactcaaaaataaattcataaatgtttggttgaccctacatatcttaattat |
37720090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 37641945 - 37641909
Alignment:
| Q |
16 |
ctcaaaaataaattcataaatgtttggttgaccctac |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37641945 |
ctcaaaaataaattcataaatgtttggttgaccctac |
37641909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 37713652 - 37713612
Alignment:
| Q |
80 |
tacaccaaatgtttttatggatactaatgaattaattaata |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37713652 |
tacaccaaatgtttgtatggatactaatgaattaattaata |
37713612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 37825944 - 37825901
Alignment:
| Q |
9 |
tactttgctcaaaaataaattcataaatgtttggttgaccctac |
52 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37825944 |
tactttactcaaaaagaaattcataaatgtttggttgaccctac |
37825901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 48119330 - 48119368
Alignment:
| Q |
118 |
atactccctccggtcctttataaaagagacaatttgaga |
156 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
48119330 |
atactccctccggtcctttttataagagacaatttgaga |
48119368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 48120010 - 48119926
Alignment:
| Q |
119 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggtatcttttctattaataattttaaa |
204 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||| || | ||||||||||||| |||||| | |||||||||| ||||| |||| |
|
|
| T |
48120010 |
tactccctccggttctttttataagagacaaattgggagattcacacagaccaaagaaagg-agtttttctattattaattctaaa |
48119926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 11026 - 11062
Alignment:
| Q |
116 |
taatactccctccggtcctttataaaagagacaattt |
152 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| |
|
|
| T |
11026 |
taatactccctccggtcctttttacaagagacaattt |
11062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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