View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14339_high_1 (Length: 309)
Name: NF14339_high_1
Description: NF14339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14339_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 24468833 - 24469123
Alignment:
| Q |
7 |
gaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatattttggagaatttggctaatgagtattgtggnnnnnnncctaatt |
106 |
Q |
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| T |
24468833 |
gaaattactatagttgttatttgacctagctttaaatgcattattgggccatatattttggagaatttggctaatgagtattgtggtttttttcctaatt |
24468932 |
T |
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| Q |
107 |
caaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24468933 |
caaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaaat |
24469032 |
T |
|
| Q |
207 |
gtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctggattcatatttctatagcctaaagaggatatgatattttgatat |
297 |
Q |
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| T |
24469033 |
gtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctggattcatattgctatagcctaaagaggatatgatattttgatat |
24469123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 24490088 - 24490334
Alignment:
| Q |
7 |
gaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatattttggagaatttggctaatgagtattgtggnnnnnnncctaatt |
106 |
Q |
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| T |
24490088 |
gaaattactatggttgaaatttgacctagcttcaaatgcattattgggccatatattttggagaatttggctaatgagtattgtggattttttcctaatt |
24490187 |
T |
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| Q |
107 |
caaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaaat |
206 |
Q |
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| T |
24490188 |
caaaaacatttcgtataattgtaagaggtgaaggacctggtggaagattgtacttttgttttttggttctaagaatgagtgaaagtaagcttatagcaat |
24490287 |
T |
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| Q |
207 |
gtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctg |
253 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24490288 |
gtatgttaaaaatagaatgagcattgtggttgcaaaatacatttctg |
24490334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 31137459 - 31137708
Alignment:
| Q |
6 |
agaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatattttggagaatttggctaatgagtattgtggnnnnnnncctaat |
105 |
Q |
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| T |
31137459 |
agaaattataatggtagttatttgccctagcttcatatgcattattggaccatatatttttgagaatttggctaatgattgttgtggtttttttcctaat |
31137558 |
T |
|
| Q |
106 |
tcaaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaaa |
205 |
Q |
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|||||||| ||| |||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||| | |
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| T |
31137559 |
tcaaaaacgtttagcataattgcaagaggtgaaggtcctggtggaagattgtaattttgttttttggttctaccaatgagggaaataaagtttatagata |
31137658 |
T |
|
| Q |
206 |
tgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctgga |
255 |
Q |
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|||||||||| | ||| | |||||||||| ||||||||||||||| |||| |
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| T |
31137659 |
tgtatgttaataggaggaggagcattgtgattgcaaaatacatttttgga |
31137708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 31151580 - 31151330
Alignment:
| Q |
6 |
agaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatattttggagaatttggctaatgagtattgtggnnnnnnncctaa- |
104 |
Q |
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|||||||| ||||| || ||||| |||||||| | |||||||||||| ||||||||||| ||||||||||||||||| | |||||| | || |
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| T |
31151580 |
agaaattataatggtagttatttgccctagcttcatatgcattattggaccatatatttttgagaatttggctaatgattgttgtggttttttttccaag |
31151481 |
T |
|
| Q |
105 |
ttcaaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaa |
204 |
Q |
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||||||||| ||| |||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
31151480 |
ttcaaaaacgtttagcataattgcaagaggtgaaggtcctggtggaagattgtaattttgttttttggttctaccaatgagtgaaagaaagtttatagat |
31151381 |
T |
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| Q |
205 |
atgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctgga |
255 |
Q |
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||||||||||| | ||| | |||||||||| ||||||||||||||| |||| |
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| T |
31151380 |
atgtatgttaataggaggaggagcattgtgattgcaaaatacatttttgga |
31151330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 31129733 - 31129491
Alignment:
| Q |
6 |
agaaattactatggttgtaatttgacctagctttaaatgcattattgggccatatattttggagaatttggctaatgagtattgtggnnnnnnncctaat |
105 |
Q |
| |
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|||||| |||||||||| ||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||| |||||| |
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| T |
31129733 |
agaaataactatggttgatatttgccctagctttaaatgcattattggaccatgtatttttgagaatttggctaatgaatattgtggtttttttcctaat |
31129634 |
T |
|
| Q |
106 |
tcaaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttttgttttttggttctaccaatgagtgaaattaagcttatagaaa |
205 |
Q |
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| T |
31129633 |
tcaaaaacgtttagcattattgtaaaacgtgaaggtcctggtggaagattatagttttggtttttggttctagaatggagtgaaaaaaagtttatagata |
31129534 |
T |
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| Q |
206 |
tgtatgttaaaaagagaatgagcattgtggttgcaaaatacat |
248 |
Q |
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| T |
31129533 |
tgtatgctaatgtgaggaggagcattgtggttgcaaaatacat |
31129491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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