View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_1 (Length: 1044)
Name: NF1433_high_1
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_1 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 334 - 669
Target Start/End: Original strand, 19876077 - 19876412
Alignment:
| Q |
334 |
ttgtgagtagaaatagtagagattgaactagaagcttggatagaaattgaacttggattattggctcagggaaatcttgtgggttaatcattttattttg |
433 |
Q |
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| T |
19876077 |
ttgtgagtagaaataatagagattgaacaagaagcttggatagaaattgaacttggattattggctcaaggaaatcttgtgggttgatcattttattttg |
19876176 |
T |
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| Q |
434 |
aaggattaattgatttctaagaaataaaatgcatccttctttattctttttcaatataagcatggacaaagattaatcaaagtgttgtattgtcaaaaga |
533 |
Q |
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| T |
19876177 |
aaggattaattgaattctaaggaataaaatgtatccttctttattctttttcaatagaagcatggacaaagattaatcaaagtgttgtattgccaaagga |
19876276 |
T |
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| Q |
534 |
ttccttatttatttgtctgttgataaagtgataatgttttttgtgaattatgaatttaatgccacattttttgtgaatgtgtgcgcacgtgcgtgcgagc |
633 |
Q |
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| T |
19876277 |
ttccttatttatttgtctgttgataaagtgataatgttttttgtgaattatcaatttaatgccatgttttttgtgaatgtgtacgcacgtgcgtgcgagc |
19876376 |
T |
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| Q |
634 |
aagggtgctttgattatttaattcataaagatacaa |
669 |
Q |
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| T |
19876377 |
aagggtgctttgattatttaattcataaagatacaa |
19876412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 564 - 669
Target Start/End: Original strand, 19879323 - 19879428
Alignment:
| Q |
564 |
ataatgttttttgtgaattatgaatttaatgccacattttttgtgaatgtgtgcgcacgtgcgtgcgagcaagggtgctttgattatttaattcataaag |
663 |
Q |
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| T |
19879323 |
ataatgttttttgtgaattatgaatttaatgccacgttttttgtgaatgtgtgcgcacgtgcgtgcgagcaaaggtgctttgattacttaattcataaag |
19879422 |
T |
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| Q |
664 |
atacaa |
669 |
Q |
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|||||| |
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| T |
19879423 |
atacaa |
19879428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 459 - 547
Target Start/End: Complemental strand, 19853566 - 19853477
Alignment:
| Q |
459 |
aaaatgcatccttctttattctttttcaatataagcatggacaaagattaatcaaagt-gttgtattgtcaaaagattccttatttattt |
547 |
Q |
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| T |
19853566 |
aaaatgcatccttctttattatttttcagtagaagcatgaacaaagattaattaaagtagttgtattgtcaaaggattccttatttattt |
19853477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 622 - 669
Target Start/End: Original strand, 19875907 - 19875954
Alignment:
| Q |
622 |
gtgcgtgcgagcaagggtgctttgattatttaattcataaagatacaa |
669 |
Q |
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| T |
19875907 |
gtgcgtgcgagcaagtgtgcgttgattatttaattcataaagatacaa |
19875954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19887164 - 19887214
Alignment:
| Q |
20 |
gctttaacattagactctactacttttaatgacttttttccttgcatttca |
70 |
Q |
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| T |
19887164 |
gctttaacattagactctactactttttaagacttttttccctgcatttca |
19887214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 19358535 - 19358485
Alignment:
| Q |
20 |
gctttaacattagactctactacttttaatgacttttttccttgcatttca |
70 |
Q |
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| T |
19358535 |
gctttaacatttcactctactactttttataacttttttcctggcatttca |
19358485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 760 - 805
Target Start/End: Complemental strand, 7219 - 7174
Alignment:
| Q |
760 |
ttatcacacttttgttttgtcaaattttattcatataagtgtatga |
805 |
Q |
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| T |
7219 |
ttatcacacttttgttttgccaaattttattcatataagtgtatga |
7174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 32578307 - 32578358
Alignment:
| Q |
20 |
gctttaacattagactctactactttta-atgacttttttccttgcatttca |
70 |
Q |
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| T |
32578307 |
gctttaacatttcactctactacttttttatgacttttttccttgcatttca |
32578358 |
T |
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