View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_high_11 (Length: 496)

Name: NF1433_high_11
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_high_11
NF1433_high_11
[»] chr4 (4 HSPs)
chr4 (16-478)||(43613318-43613776)
chr4 (102-165)||(56127364-56127427)
chr4 (55-126)||(8482361-8482432)
chr4 (79-120)||(30020897-30020938)
[»] chr8 (4 HSPs)
chr8 (24-168)||(34018195-34018339)
chr8 (57-158)||(39785588-39785689)
chr8 (77-168)||(6863024-6863115)
chr8 (54-155)||(5654685-5654786)
[»] chr5 (4 HSPs)
chr5 (16-168)||(33155551-33155703)
chr5 (101-168)||(3769908-3769975)
chr5 (56-141)||(1995111-1995196)
chr5 (35-124)||(31661043-31661132)
[»] chr1 (5 HSPs)
chr1 (55-148)||(7890383-7890476)
chr1 (26-168)||(39742508-39742650)
chr1 (96-148)||(7890265-7890317)
chr1 (38-122)||(27925336-27925420)
chr1 (42-122)||(49920315-49920395)
[»] chr2 (2 HSPs)
chr2 (75-161)||(38318051-38318137)
chr2 (88-178)||(11016496-11016586)
[»] chr3 (8 HSPs)
chr3 (77-168)||(49995011-49995102)
chr3 (97-141)||(4221643-4221687)
chr3 (16-152)||(42347312-42347447)
chr3 (79-122)||(23141896-23141939)
chr3 (97-168)||(40386281-40386352)
chr3 (22-119)||(22404113-22404211)
chr3 (40-148)||(33125998-33126106)
chr3 (132-168)||(35052458-35052494)
[»] chr7 (2 HSPs)
chr7 (96-168)||(39611731-39611803)
chr7 (55-168)||(11457563-11457674)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Complemental strand, 43613776 - 43613318
Alignment:
16 atggtcttacaccatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtg 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
43613776 atggtcttacaccatgtataagtatcttttttatcatcagatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatc-aacagtg 43613678  T
116 aaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaattagcctgaattagattcaaaccaaattctaaaagaatttttgcatgtg 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||    
43613677 aaaactagtttgtgtttgatgcaagacttgtctcacttgtgcactatagaattggc---aattagattcaaaccaaattctaaaagaatttttgcatgtg 43613581  T
216 ctggttaccgaatctgcctcttctttggcctttctagttgtctgtcttcatcagtgtcttcctctatttcacataccctcgcatggctgcaaccgatcac 315  Q
     |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
43613580 ttggttaccgaatttgcctcctctttggcctttctagttgtctgtcttcatcagtgtcttcctctatttcacataccctcgcatgcctgcaaccgatcac 43613481  T
316 atgaaacagtcacatgttctcagttgaaaaatatcctaaagtttagctttcatactgtccatgatttnnnnnnnnnnnnnnnnnnnnggtcaccatgctt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||    
43613480 atgaaacagtcacatgttctcagttgaaaaatatcctaaagtttagctttcatactgtccatgatttaaaaaatgaaagaaaaaaaaggtcaccatgctt 43613381  T
416 catttttcagaaaggaatcagcaatacatcagtggcaaatttaagtgtatttaacatatggac 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43613380 catttttcagaaaggaatcagcaatacatcagtggcaaatttaagtgtatttaacatatggac 43613318  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 56127427 - 56127364
Alignment:
102 ttgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactataga 165  Q
    |||| ||||| |||||||| ||||||||  || ||||||||||||||||||||||||| |||||    
56127427 ttgaaccaatggtgaaaacaagtttgtgcatggtgcaagacttgtctcacttgtgcaccataga 56127364  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 8482432 - 8482361
Alignment:
55 gatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagttt 126  Q
    |||||| ||||||| |||  | |||||||||| ||||||  |||||||||| ||||| ||||||||||||||    
8482432 gatcaaaaagtcatgtcatatttcatttaatttaatggtgaaatttattgaaccaatggtgaaaactagttt 8482361  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 30020897 - 30020938
Alignment:
79 atttaattaaatggttgaatttattgatccaatagtgaaaac 120  Q
    |||||||| |||||||||||||||||||  ||||||||||||    
30020897 atttaatttaatggttgaatttattgatttaatagtgaaaac 30020938  T

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Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 34018195 - 34018339
Alignment:
24 acaccatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactag 123  Q
    |||||||| | ||||| |||||| | ||||||||||| |||||| ||||  |||||||||||| |||||| ||||||||||||||||| || ||||||||    
34018195 acaccatgcacaagtaactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatccaatggtaaaaactag 34018294  T
124 tttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
     |||||  |||||||||||||||||||||| |||||  |||||||    
34018295 cttgtgcatgatgcaagacttgtctcacttatgcaccttagaatt 34018339  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 39785689 - 39785588
Alignment:
57 tcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtg 156  Q
    |||| |||||||||||  |||||||||||| ||| || | ||||||||||||||| ||||||||||| || ||  |||||||||||||||||||||||||    
39785689 tcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtg 39785590  T
157 ca 158  Q
    ||    
39785589 ca 39785588  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 6863115 - 6863024
Alignment:
77 tcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
    |||||||||| ||||||   ||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||| ||||| | ||||||    
6863115 tcatttaatttaatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaagacttgtctcacttatgcaccagagaatt 6863024  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 5654685 - 5654786
Alignment:
54 ggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcactt 153  Q
    |||||||||||||||||||  |||||||||||| ||| || ||||||||| ||| | | ||||||| | |||| ||| |||| |||||||||||||| ||    
5654685 ggatcaataagtcatatcatatctcatttaatttaatagtggaatttatttatcaagtggtgaaaatttgtttctgtatgatacaagacttgtctcattt 5654784  T
154 gt 155  Q
    ||    
5654785 gt 5654786  T

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Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 33155551 - 33155703
Alignment:
16 atggtcttacaccatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtg 115  Q
    |||||| | ||||||| | ||||  |||||| | ||||||||||| |||||| ||||  |||||||||||| |||||| | ||||||||||||||| |||    
33155551 atggtcctgcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtgggatttattgatccaatggtg 33155650  T
116 aaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
    |||||||| |||||  ||||||||||||||||||||||||||||  |||||||    
33155651 aaaactagcttgtgcatgatgcaagacttgtctcacttgtgcaccttagaatt 33155703  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 3769908 - 3769975
Alignment:
101 attgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
    |||| |||||| ||||||||||  |||||  ||||||||||||||| |||||||||||| ||||||||    
3769908 attggtccaatggtgaaaactaacttgtgcatgatgcaagacttgtttcacttgtgcaccatagaatt 3769975  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 1995196 - 1995111
Alignment:
56 atcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaaga 141  Q
    |||||||| ||||||||  | |||| ||||| ||| ||  ||||||| |||| |||||||||||||||||||||| ||||| ||||    
1995196 atcaataaatcatatcatatttcatataatttaattgtaaaatttatcgatctaatagtgaaaactagtttgtgtatgatgtaaga 1995111  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 31661043 - 31661132
Alignment:
35 aagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagt 124  Q
    |||||||||||| ||||  |||||||||| |||||| |  |||||||||||| ||| ||| ||||||||| || ||||  ||||||||||    
31661043 aagtatctttttcatcagtggatcaataaatcatattatatctcatttaatttaatagttaaatttattgttcaaataacgaaaactagt 31661132  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 7890476 - 7890383
Alignment:
55 gatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtct 148  Q
    |||||||| |||| ||||  | |||||||||| ||||||  ||||||||||||||||||||||||||| ||||||  |||||||| ||||||||    
7890476 gatcaatacgtcacatcatatttcatttaatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcatgatgcaatacttgtct 7890383  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 39742650 - 39742508
Alignment:
26 accatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtt 125  Q
    |||||| |||| ||||||| ||||| |  |||||||||||||| |||  | |||||||||| |||||| | ||||||||||| ||  || ||||||||||    
39742650 accatgcataaatatctttcttatcgttagatcaataagtcatgtcatatttcatttaatttaatggtgggatttattgatctaagggtaaaaactagtt 39742551  T
126 tgtgtctgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
    |||   ||||||| |  |||||||||||| |||  ||||||||    
39742550 tgtacatgatgcagggtttgtctcacttgggcatcatagaatt 39742508  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 7890317 - 7890265
Alignment:
96 aatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtct 148  Q
    ||||||||||| |||  ||||||| |||||||||  |||||||||||||||||    
7890317 aatttattgattcaagggtgaaaattagtttgtgcatgatgcaagacttgtct 7890265  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 27925336 - 27925420
Alignment:
38 tatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaacta 122  Q
    |||||||||||||||  ||||||||| ||| ||||  |||||||| ||| |||  |  |||||||||||||||| ||| ||||||    
27925336 tatcttttttatcattagatcaataaatcacatcatatctcattttatttaatcatgaaatttattgatccaatggtggaaacta 27925420  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 49920395 - 49920315
Alignment:
42 ttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaacta 122  Q
    ||||||||||| |||||||||| | | ||||  |||||||| ||| ||||||   ||||||||||||||| ||| ||||||    
49920395 ttttttatcattggatcaataaattacatcatatctcatttgatttaatggtgtgatttattgatccaattgtggaaacta 49920315  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 38318137 - 38318051
Alignment:
75 tctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcacta 161  Q
    |||||||||||| ||||||  |||||||||||| |||||||||| ||| ||| | | ||||||||||||||| ||| ||||||||||    
38318137 tctcatttaatttaatggtaaaatttattgatcaaatagtgaaagctaatttatatatgatgcaagacttgtttcatttgtgcacta 38318051  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 11016496 - 11016586
Alignment:
88 aatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaattagcctgaatt 178  Q
    |||||||||||||||||||||||   | ||||||| ||||||   |||||  ||||||| |||||||| ||||||| | ||||||| ||||    
11016496 aatggttgaatttattgatccaaccctaaaaactattttgtgcacgatgcctgacttgtttcacttgtacactataaagttagcctcaatt 11016586  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 49995011 - 49995102
Alignment:
77 tcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
    |||||||||| |||||| |||||||| |||  |||    ||||||| ||||||  |||||||||||||||||||||||||||| ||| ||||    
49995011 tcatttaatttaatggtggaatttatcgatgtaatgtcaaaaactaatttgtgcatgatgcaagacttgtctcacttgtgcacaataaaatt 49995102  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 4221687 - 4221643
Alignment:
97 atttattgatccaatagtgaaaactagtttgtgtctgatgcaaga 141  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||    
4221687 atttattgatccaatagtgaaaattagtttgtgcgtgatgcaaga 4221643  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 42347447 - 42347312
Alignment:
16 atggtcttacaccatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtg 115  Q
    |||||||| ||||||| |||||| || |||| | ||| |||| ||||||||  ||||  |||||| ||||| |||| |   |||||||||||||||| |     
42347447 atggtcttgcaccatgaataagtgtccttttcaccattggattaataagtcgcatcatatctcatataatttaatgatgagatttattgatccaataata 42347348  T
116 aaaactagtttgtgtctgatgcaagacttgtctcact 152  Q
    |||||||| ||||| |  ||||||||||||| |||||    
42347347 aaaactagcttgtg-catatgcaagacttgtttcact 42347312  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 23141939 - 23141896
Alignment:
79 atttaattaaatggttgaatttattgatccaatagtgaaaacta 122  Q
    |||||||| ||||||  |||||||||||||||||||||||||||    
23141939 atttaatttaatggtcaaatttattgatccaatagtgaaaacta 23141896  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 40386352 - 40386281
Alignment:
97 atttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
    ||||||||||||||| ||| ||||| | |||||  |||||||| ||||||  ||||||||||| ||||||||    
40386352 atttattgatccaatggtggaaactggcttgtgcatgatgcaaaacttgttacacttgtgcaccatagaatt 40386281  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 22404211 - 22404113
Alignment:
22 ttacaccatgtataagtatcttttt-tatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaa 119  Q
    |||||||||||| |||||||||||| || |||  |||||||||| ||||||| |||  |||||||| ||| || |  |||||||||| ||| |||||||    
22404211 ttacaccatgtacaagtatctttttctaacatttgatcaataagccatatcatgtcatatttaatttaatagtggggtttattgatcaaattgtgaaaa 22404113  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 33125998 - 33126106
Alignment:
40 tcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaa 139  Q
    ||||||| |||||  ||||||||||||| ||    ||||| |||||| ||||||  | ||||||||||| |   ||||||||| ||||||| || |||||    
33125998 tctttttcatcattagatcaataagtcacattttatctcagttaatttaatggtgaactttattgatccgacgatgaaaactaatttgtgtatggtgcaa 33126097  T
140 gacttgtct 148  Q
    |||||||||    
33126098 gacttgtct 33126106  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 35052494 - 35052458
Alignment:
132 tgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
    |||||||| | ||||||||||||||||||||||||||    
35052494 tgatgcaaaatttgtctcacttgtgcactatagaatt 35052458  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 39611731 - 39611803
Alignment:
96 aatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt 168  Q
    |||||||||||||||| ||| ||| |||||| |   | |||||||||||| ||||||||||||| ||||||||    
39611731 aatttattgatccaatggtgcaaaatagtttattcattatgcaagacttgcctcacttgtgcaccatagaatt 39611803  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 11457674 - 11457563
Alignment:
55 gatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaag--acttgtctcact 152  Q
    |||||| |||||| ||||| |||||||||||| |||||| ||||||||| ||| |||| | |||||    |||||   ||||||||  |||||||||| |    
11457674 gatcaaaaagtcacatcacttctcatttaatttaatggtggaatttattcatcaaatatttaaaac----ttgtgcacgatgcaagaaacttgtctcatt 11457579  T
153 tgtgcactatagaatt 168  Q
    ||||||| ||||||||    
11457578 tgtgcaccatagaatt 11457563  T

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