View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_12 (Length: 466)
Name: NF1433_high_12
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 69 - 253
Target Start/End: Complemental strand, 40323526 - 40323342
Alignment:
| Q |
69 |
ggaagaatatgaagattaaaaggctgtaagattggaaccaccacctgaccatatttttcattttcaaaatttagcagtatgtttttacctttattgaaaa |
168 |
Q |
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| T |
40323526 |
ggaagaatataaagattaaaaggctgtaagattggaaacaccgcttgaccatatttttcatttccaaaatttagtagtatgttgtcacctttattgaaaa |
40323427 |
T |
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| Q |
169 |
tagcataattaaatgcaatacaaagtatctcaattctcaagtattacatttttgatgcagctcataaaatgaggacggtgcacca |
253 |
Q |
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| T |
40323426 |
tagcataattaaatgcaatacaaagtatctcaattctcaagtattacatttttgatgcagttcataaaatgaggacggtgcacca |
40323342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 40323589 - 40323547
Alignment:
| Q |
17 |
gtggagtgtcatgactaaaggaaactcgttttatgagggaaac |
59 |
Q |
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| T |
40323589 |
gtggagtgtcatgactaaaggaaactcgttttatgagggaaac |
40323547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 379
Target Start/End: Complemental strand, 1236476 - 1236370
Alignment:
| Q |
272 |
aaattggcaaagactttggagggaaatattttagggttaacaattttggtaattaatgcattacaattagagggaaatttttaggtttagatgttgcttg |
371 |
Q |
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| T |
1236476 |
aaattgccaaagactttggagggaaatgttttagggttaacaatttag-taatttatgcagtacagttagagggaaatttttaggtttagatgttgcttt |
1236378 |
T |
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| Q |
372 |
acctaata |
379 |
Q |
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| T |
1236377 |
acctaata |
1236370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 448
Target Start/End: Complemental strand, 2643822 - 2643777
Alignment:
| Q |
403 |
ggagatgttcaacagtcacaaacacatttctgatttttgcaagaac |
448 |
Q |
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| T |
2643822 |
ggagatgttcaacaagcacaaacacatttcagatttttgcaagaac |
2643777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 1237095 - 1237016
Alignment:
| Q |
209 |
gtattacatttttgatgcagctcataaaatgaggacggtgcacca--nnnnnnnnattggaattcaaattggcaaagactt |
287 |
Q |
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| T |
1237095 |
gtattacattttcgatg-agcgcataaaatgaggacggtgcaccattttttttttattggaattcaaattggcaaagactt |
1237016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 4098934 - 4098873
Alignment:
| Q |
324 |
ttaatgcattacaattagagggaaatttttaggtttagatgttgcttgacctaataagcttt |
385 |
Q |
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| T |
4098934 |
ttaatgcagcacaattagagggaaaaatctaggtttaggtgttgtatgacctaataagcttt |
4098873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 398 - 448
Target Start/End: Complemental strand, 7886686 - 7886636
Alignment:
| Q |
398 |
atgtaggagatgttcaacagtcacaaacacatttctgatttttgcaagaac |
448 |
Q |
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| T |
7886686 |
atgtaggagatgttcaacagtcacaaacacatttctgatttttgcaagaac |
7886636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 395
Target Start/End: Original strand, 38088898 - 38089025
Alignment:
| Q |
267 |
aattcaaattggcaaagactttggagggaaatattttagggttaacaattttggtaattaatgcattacaattagagggaaatttttaggtttagatgtt |
366 |
Q |
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||||||||||||||| | || ||||||||| || |||||||||||| || | | |||||||| ||||||||||| ||||| |||||||||| |||| |
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| T |
38088898 |
aattcaaattggcaagaatttgggagggaaacatattagggttaacatgcttaggagttaatgcaacacaattagaggaaaattattaggtttaggtgtt |
38088997 |
T |
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| Q |
367 |
gcttgacctaataagcttttaaggataag |
395 |
Q |
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| T |
38088998 |
gcttaacctaataa-cttttaagaataag |
38089025 |
T |
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