View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_20 (Length: 395)
Name: NF1433_high_20
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 22421660 - 22422030
Alignment:
| Q |
17 |
ataagctccacaacaattttcctactttcattcccaacaacagccttagaaatttccaatatcaaattatcctcatcatcacaaacagcaacaccaatcc |
116 |
Q |
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|||||||||||| ||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22421660 |
ataagctccacagcaattttacgactctcattcccatcaacagtcttagaaatttccaatatcaaattatcctcatcatcacaaacagcaacaccaatcc |
22421759 |
T |
|
| Q |
117 |
cagccaaagaaacattctcacctctcacaacctcctcactcactaaacccttaaaataaaccctaacaaccggactatcatcgttccgactcgtcgaacc |
216 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| |
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| T |
22421760 |
cagccaaagaaacactctcacctctcacactctcctcactcactaaacccttaaaataaaccctaacaaccggaccttcattgttccgcatcgtcgaacc |
22421859 |
T |
|
| Q |
217 |
cgacaaactcccttcaccaaacggtttctcaaaattatccccccatttatcccaatcctccaccggcatgttgaaaatctccgacgccattttctgatca |
316 |
Q |
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||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22421860 |
cgaagaactcccttcaccaaacggtttctcgaaattatctccccattcatcccaatccttcaccggcatgttgaaaatctccgacgccattttctgatca |
22421959 |
T |
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| Q |
317 |
tgaatccgacggttgagatcatctctcgcttcacgcattgctttctcgctttgcagtctgtcgttcatctc |
387 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||| |
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| T |
22421960 |
tgaatccgacggttgagatcgtctctcgcttcacgcattgctctctcgctttgtaatctgtcgttcatctc |
22422030 |
T |
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