View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_high_27 (Length: 336)

Name: NF1433_high_27
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_high_27
NF1433_high_27
[»] chr8 (2 HSPs)
chr8 (1-140)||(12591202-12591341)
chr8 (275-318)||(12591335-12591378)
[»] chr6 (18 HSPs)
chr6 (15-297)||(29672570-29672852)
chr6 (25-295)||(29721389-29721659)
chr6 (1-159)||(28489269-28489427)
chr6 (1-159)||(29801679-29801837)
chr6 (129-301)||(28488986-28489158)
chr6 (132-315)||(29691255-29691432)
chr6 (35-287)||(29757413-29757665)
chr6 (129-301)||(29801396-29801568)
chr6 (132-310)||(28475563-28475735)
chr6 (156-246)||(28488900-28488990)
chr6 (156-246)||(29801310-29801400)
chr6 (164-300)||(29705111-29705248)
chr6 (34-315)||(29470480-29470761)
chr6 (38-162)||(29691543-29691667)
chr6 (25-154)||(29705372-29705501)
chr6 (38-160)||(28475848-28475970)
chr6 (133-246)||(29664139-29664252)
chr6 (170-246)||(29470757-29470833)
[»] scaffold0012 (4 HSPs)
scaffold0012 (23-301)||(210541-210816)
scaffold0012 (35-226)||(237319-237510)
scaffold0012 (131-214)||(237200-237283)
scaffold0012 (195-255)||(200070-200130)
[»] chr3 (2 HSPs)
chr3 (35-169)||(616267-616401)
chr3 (132-301)||(616505-616674)
[»] scaffold0007 (2 HSPs)
scaffold0007 (158-300)||(73871-74013)
scaffold0007 (170-246)||(74024-74100)
[»] chr1 (2 HSPs)
chr1 (58-246)||(5921123-5921311)
chr1 (195-255)||(5920409-5920469)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 12591202 - 12591341
Alignment:
Q  1 tttaaatcttcagcatagtgaaggtttagcagagatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaatt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12591202 tttaaatcttcagcatagtgaaggtttagcagaaatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaatt 12591301  T
Q  101 acaattgataactcggttggttttttgcgtaaacttaaaa 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12591302 acaattgataactcggttggttttttgcgtaaacttaaaa 12591341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 12591335 - 12591378
Alignment:
Q  275 cttaaaaccatgagtattagaggttgccacgagttaaggagact 318  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  12591335 cttaaaaccatgagtattagaggttgccatgagttaaggagact 12591378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 29672852 - 29672570
Alignment:
Q  15 atagtgaaggtttagcagagatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactc 114  Q
    ||||||| |||||| || |||||||||||||||||| |||  |||||||||||||||||||||||||| ||| || | || || | ||||||||| | ||    
T  29672852 atagtgacggtttaacacagatacctgatatatctggtctcccaaatttagaagaattttcaattcaaaattatgggaaattattcacaattgatgaatc 29672753  T
Q  115 ggttggttttttgcgtaaacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgat 214  Q
    |||||| | ||||||||| ||||||||| ||||  ||||| |||||| | |||||   | | ||||| ||||||||||||| ||||||||| |||| |||    
T  29672752 ggttggatctttgcgtaagcttaaaatcctgagggttataagttgcaccgaaatccacagtcttccatctctcatgttaccctctctagaaaaacttgat 29672653  T
Q  215 ttttcagattgtactagtcttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattagagg 297  Q
     ||||| |||||| || ||||||||||||| ||  ||||||||  | ||||||| ||||||||| |||||||||| |||||||    
T  29672652 ctttcatattgtattaatcttgagagtttttcgcatgtggtagatgggtttggtgataagcttagaaccatgagtgttagagg 29672570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 29721659 - 29721389
Alignment:
Q  25 tttagcagagatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggtttt 124  Q
    ||||||| | |||||||||||||||| |||   ||||||||||||||||||||| ||| ||||| ||  ||||||| |||||||||| ||| | ||||||    
T  29721659 tttagcacaaatacctgatatatctggtctcctaaatttagaagaattttcaatacaatattgtaagacactaattgcaattgataaatcgataggtttt 29721560  T
Q  125 ttgcgtaaacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagatt 224  Q
    ||  |||| |||||||| |||||| || ||   |||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||| |    
T  29721559 ttaggtaaccttaaaattttgagaattgtaaaatgcaccgaaatcagaattattccacctctcatgttaccttctctagaagaactctatctttcagagt 29721460  T
Q  225 gtactagtcttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattaga 295  Q
    ||| || |||||||| |||| |  ||||| |||  || |||||| ||||||||||||  |||||| |||||    
T  29721459 gtagtaatcttgagaatttttcacctgtgatagatgactttggtgataagcttaaaataatgagtgttaga 29721389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 28489427 - 28489269
Alignment:
Q  1 tttaaatcttcagcatagtgaaggtttagcagagatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaatt 100  Q
    |||||||||| | |||||||||||||||||||| |||||| ||||||||| |||  |||||||||||||||||||||||||| || ||||| || |||||    
T  28489427 tttaaatcttgatcatagtgaaggtttagcagaaatacctaatatatctggtctcccaaatttagaagaattttcaattcaaaatggtgagaaagtaatt 28489328  T
Q  101 acaattgataactcggttggttttttgcgtaaacttaaaatcttgagatttatatgttg 159  Q
     |||||||||| ||| ||||||||||| |||||||||||||||| ||| ||||| ||||    
T  28489327 gcaattgataaatcgattggttttttgggtaaacttaaaatctttagaattataagttg 28489269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 29801837 - 29801679
Alignment:
Q  1 tttaaatcttcagcatagtgaaggtttagcagagatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaatt 100  Q
    |||||||||| | |||||||||||||||||||| |||||| ||||||||| |||  |||||||||||||||||||||||||| || ||||| || |||||    
T  29801837 tttaaatcttgatcatagtgaaggtttagcagaaatacctaatatatctggtctcccaaatttagaagaattttcaattcaaaatggtgagaaagtaatt 29801738  T
Q  101 acaattgataactcggttggttttttgcgtaaacttaaaatcttgagatttatatgttg 159  Q
     |||||||||| ||| ||||||||||| |||||||||||||||| ||| ||||| ||||    
T  29801737 gcaattgataaatcgattggttttttgggtaaacttaaaatctttagaattataagttg 29801679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 129 - 301
Target Start/End: Complemental strand, 28489158 - 28488986
Alignment:
Q  129 gtaaacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtac 228  Q
    |||||||||||||||| ||  |||||  ||| | ||||||||  ||||||||| | ||||| |||||||||||||||||||| ||| |||||||||||||    
T  28489158 gtaaacttaaaatcttaagggttataaattgtaccaaaatcaaaattattccatcactcattttaccttctctagaagaacttgatctttcagattgtac 28489059  T
Q  229 tagtcttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattagaggttgc 301  Q
    | ||||||||||||||||  || ||||||  | ||||||| |||||||||||||||||||| |||||||||||    
T  28489058 tggtcttgagagttttccacctttggtagatgggtttggtgataagcttaaaaccatgagtgttagaggttgc 28488986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 315
Target Start/End: Complemental strand, 29691432 - 29691255
Alignment:
Q  132 aacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactag 231  Q
    ||||||||||||||||  ||||| || ||| |||||||||  |||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  29691432 aacttaaaatcttgagggttataggtagcagcaaaatcagacttattccatctctcgtgttaccttctctagaagaactcgatcttttagattgtactag 29691333  T
Q  232 tcttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattagaggttgccacgagttaaggag 315  Q
    |||||| |||||| |   | ||||      ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||    
T  29691332 tcttgacagtttttcacatatggt------gtttggtgataagcttaaaaccatgagttttagaggttgctacgagttaaggag 29691255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 35 - 287
Target Start/End: Complemental strand, 29757665 - 29757413
Alignment:
Q  35 atacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggttttttgcgtaaac 134  Q
    |||||| ||||||||| ||| |||||||||||| || |||||||| || |||||  | |||||||| |||||||||| |||||||||||| |  ||||||    
T  29757665 atacctaatatatctggtctctcaaatttagaaaaactttcaattaaaaattgttggaaactaattgcaattgataaatcggttggttttctaggtaaac 29757566  T
Q  135 ttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagtct 234  Q
    |||||||||||||| |||||  |||||   |||||  || ||||||| ||||||||||| ||||||||| ||||||| || ||||||  || | ||| ||    
T  29757565 ttaaaatcttgagacttataaattgcattgaaatccagagtattccacctctcatgttagcttctctagtagaactccatctttcaggatgcaatagcct 29757466  T
Q  235 tgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatga 287  Q
    ||||||||||||  ||||| |||  |  |||||| ||||||| ||||||||||    
T  29757465 tgagagttttccacctgtgttagatggatttggtgataagctaaaaaccatga 29757413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 129 - 301
Target Start/End: Complemental strand, 29801568 - 29801396
Alignment:
Q  129 gtaaacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtac 228  Q
    |||||||||||||||| ||  |||||  ||| | ||||||||  ||||||||| | ||||| |||||||||||||||||||| ||| |||||||||||||    
T  29801568 gtaaacttaaaatcttaagggttataaattgtaccaaaatcaaaattattccatcactcattttaccttctctagaagaacttgatctttcagattgtac 29801469  T
Q  229 tagtcttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattagaggttgc 301  Q
    | ||||||||||||||||  || ||||||  | ||||||| |||||||||||||||||||| |||||||||||    
T  29801468 tggtcttgagagttttccacctttggtagatgggtttggtgataagcttaaaaccatgagtgttagaggttgc 29801396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 310
Target Start/End: Complemental strand, 28475735 - 28475563
Alignment:
Q  132 aacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactag 231  Q
    ||||||||||||||||  ||||| |||||| |||||||||  |||||| | ||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  28475735 aacttaaaatcttgagggttataggttgcagcaaaatcagacttattcaatctctcgtgttaccttctctagaagaactcgatcttttagattgtactag 28475636  T
Q  232 tcttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattagaggttgccacgagtta 310  Q
    |||||| |||||| |   | ||||      ||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  28475635 tcttgacagtttttcaaatatggt------gtttggtgataagcttaaaaccatgagttttagaggttgctacgagtta 28475563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 28488990 - 28488900
Alignment:
Q  156 gttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagtcttgagagttttcc 246  Q
    |||||| ||| || |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  28488990 gttgcatcaatataaggagtattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagttttcc 28488900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 29801400 - 29801310
Alignment:
Q  156 gttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagtcttgagagttttcc 246  Q
    |||||| ||| || |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  29801400 gttgcatcaatataaggagtattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagttttcc 29801310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 29705248 - 29705111
Alignment:
Q  164 aaaatcaggattattccaactctcatgttaccttctctagaag-aactcgatttttcagattgtactagtcttgagagttttccgtctgtggtagcagag 262  Q
    |||||||| ||||||||| |||||||||||||||||| | ||| |||  ||| |||| ||||||||| |||||||||||||||   ||| |||||  | |    
T  29705248 aaaatcagaattattccatctctcatgttaccttctccaaaagaaaccagatctttcggattgtactggtcttgagagttttcaacctggggtagatggg 29705149  T
Q  263 tttggtaataagcttaaaaccatgagtattagaggttg 300  Q
    |||||| |||||||||||||||||| | ||||||||||    
T  29705148 tttggtgataagcttaaaaccatgaatgttagaggttg 29705111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 29470480 - 29470761
Alignment:
Q  34 gatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggttttttgcgtaaa 133  Q
    ||||||||| ||||||| |||   ||||||||||||| ||||  |||||||||||| | |  |||| ||| | ||| |||| ||||| ||| || ||||     
T  29470480 gatacctgacatatctggtctcgtaaatttagaagaactttcttttcaagattgtgtgaatttaatcacagtcgatgactccgttgggtttctgggtaat 29470579  T
Q  134 cttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagtc 233  Q
    ||||||| ||| |||  |||  |||||| |||  |||||| ||||||  |||||| |||  ||||||| |||||||||||| ||||| | ||| || |||    
T  29470580 cttaaaaccttaagagctatgcgttgcatcaagctcaggagtattccgcctctcaagttggcttctctggaagaactcgatctttcacagtgttcttgtc 29470679  T
Q  234 ttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattagaggttgccacgagttaaggag 315  Q
    |||||||||||||  |||||||||  | ||| |   |||| ||||||||||||| | ||||| |||||  | ||||||||||    
T  29470680 ttgagagttttccacctgtggtagatgggttggtggataaacttaaaaccatgactgttagaagttgcgtcaagttaaggag 29470761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 29691667 - 29691543
Alignment:
Q  38 cctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggttttttgcgtaaactta 137  Q
    |||||||| ||| ||||  ||||||||||| ||||||||||||||||||||       |||||||||||||| | || ||||| |||||| |||||||||    
T  29691667 cctgatatctctaatctcccaaatttagaacaattttcaattcaagattgtactagtttaattacaattgatgaatctgttggctttttgagtaaactta 29691568  T
Q  138 aaatcttgagatttatatgttgcaa 162  Q
    ||||||||||||| ||| |||||||    
T  29691567 aaatcttgagattgataggttgcaa 29691543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 29705501 - 29705372
Alignment:
Q  25 tttagcagagatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggtttt 124  Q
    ||||||| | ||| |||||||| ||| |||  ||||  |||||||||||| |||||||  || | ||||||||||| |||||||||| ||||||| ||||    
T  29705501 tttagcacaaatatctgatataactggtctcccaaacatagaagaatttttaattcaaagttataaggaactaattgcaattgataaatcggttgttttt 29705402  T
Q  125 ttgcgtaaacttaaaatcttgagatttata 154  Q
    ||  ||| |||| |||||||||||||||||    
T  29705401 ttaggtagacttcaaatcttgagatttata 29705372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 28475970 - 28475848
Alignment:
Q  38 cctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggttttttgcgtaaactta 137  Q
    |||||||| ||| ||||  ||||||||||| ||||||||||||||||||||       |||||||||||||| | ||  |||| |||||| |||||||||    
T  28475970 cctgatatctctaatctcccaaatttagaacaattttcaattcaagattgtactagtttaattacaattgatgaatctattggctttttgagtaaactta 28475871  T
Q  138 aaatcttgagatttatatgttgc 160  Q
    ||||||||||||| ||| |||||    
T  28475870 aaatcttgagattgataggttgc 28475848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 29664252 - 29664139
Alignment:
Q  133 acttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagt 232  Q
    |||||||| ||| ||| |||| ||||||| |||  |||||| ||||||| ||||||  ||  |||||||||||||||| ||| ||||||| ||| |  ||    
T  29664252 acttaaaaccttaagagttatgtgttgcatcaagctcaggagtattccacctctcaacttggcttctctagaagaacttgatctttcagagtgttcatgt 29664153  T
Q  233 cttgagagttttcc 246  Q
    ||||||||||||||    
T  29664152 cttgagagttttcc 29664139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 29470757 - 29470833
Alignment:
Q  170 aggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagtcttgagagttttcc 246  Q
    |||| |||||||||||| | |||  ||||  |||||||||||||| ||||| |||||  |||||| |||||||||||    
T  29470757 aggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttcc 29470833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 301
Target Start/End: Complemental strand, 210816 - 210541
Alignment:
Q  23 ggtttagcagagatacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggtt 122  Q
    ||||||||| | |||||||||||||||| |||  ||||||||||| || |||||||| || |||||  |||||||||| |||||||||| ||||||||||    
T  210816 ggtttagcacaaatacctgatatatctggtctaccaaatttagaaaaactttcaattaaaaattgttgggaactaattgcaattgataaatcggttggtt 210717  T
Q  123 ttttgcgtaaacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcaga 222  Q
    || |  |||||||||||||||||| |   |||||   ||  ||||||| || | ||||| | |||||||||||||||||||||||||| ||| ||||||     
T  210716 ttctaggtaaacttaaaatcttgaaa---atatgcaacactaaaatcaagagtgttccacccctcatgttaccttctctagaagaacttgatctttcagg 210620  T
Q  223 ttgtactagtcttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattagaggttgc 301  Q
     |||| || ||||||| ||||| |   || |||||  | ||||||| |||||||||||||||||||| |||||||||||    
T  210619 atgtagtattcttgagggtttttcacatgaggtagatgggtttggtgataagcttaaaaccatgagttttagaggttgc 210541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 237510 - 237319
Alignment:
Q  35 atacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggttttttgcgtaaac 134  Q
    ||||||||||||||||  ||  | ||||||||| |||||||||||||| ||||| |  ||||||||||||||||||| |||||||||| |||||  ||||    
T  237510 atacctgatatatctggactcccgaatttagaacaattttcaattcaaaattgtaatcaactaattacaattgataaatcggttggttatttgcagaaac 237411  T
Q  135 ttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgt 226  Q
    |||||||||||||||||||| |||||| ||||||  ||| | ||||| ||||||  ||  ||||  | ||||||||||| |||||| |||||    
T  237410 ttaaaatcttgagatttataagttgcaccaaaatacggagtgttccacctctcagtttggcttcattggaagaactcgaattttcatattgt 237319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 237283 - 237200
Alignment:
Q  131 aaacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgat 214  Q
    |||||||||||||||||  ||||| | |||| ||||||||  ||||||||| ||||||| ||||||||||||||||||||||||    
T  237283 aaacttaaaatcttgagggttataggatgcaccaaaatcaaaattattccatctctcatattaccttctctagaagaactcgat 237200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 200130 - 200070
Alignment:
Q  195 cttctctagaagaactcgatttttcagattgtactagtcttgagagttttccgtctgtggt 255  Q
    |||| |||||||||||| |||||||| |||||  |||||| ||||||||||| ||||||||    
T  200130 cttcactagaagaactcaatttttcatattgtgatagtctcgagagttttccatctgtggt 200070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 616267 - 616401
Alignment:
Q  35 atacctgatatatctgatctttcaaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggttttttgcgtaaac 134  Q
    |||||||||||||||| |||  |||||||||||||||||||| ||||| | |||  |||||||| |||||||||||| || |||||||||||||||||||    
T  616267 atacctgatatatctggtctcccaaatttagaagaattttcagttcaaaaatgttgggaactaactacaattgataaatcagttggttttttgcgtaaac 616366  T
Q  135 ttaaaatcttgagatttatatgttgcaacaaaatc 169  Q
    ||||||||||||||||||||  ||||| |||||||    
T  616367 ttaaaatcttgagatttatagattgcaccaaaatc 616401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 132 - 301
Target Start/End: Original strand, 616505 - 616674
Alignment:
Q  132 aacttaaaatcttgagatttatatgttgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactag 231  Q
    ||||||||||||| ||  |||||   |||| ||||||||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||     
T  616505 aacttaaaatcttaaggattataaaatgcaccaaaatcaaaattattccatctctcatgttaccttctctagaagaactcgatctttcagattgtactaa 616604  T
Q  232 tcttgagagttttccgtctgtggtagcagagtttggtaataagcttaaaaccatgagtattagaggttgc 301  Q
    |||||||| ||||    |||||| ||  | ||||||| |||||||||||||||||||| ||||| |||||    
T  616605 tcttgagaattttttacctgtggaagatgggtttggtgataagcttaaaaccatgagtgttagacgttgc 616674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 300
Target Start/End: Original strand, 73871 - 74013
Alignment:
Q  158 tgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagtcttgagagttttccgtctgtggtag 257  Q
    |||| ||||||||| |||||||||  ||||||||||||||||||||||||||| ||  ||||| |||||| || ||||||||||||| |  || ||||||    
T  73871 tgcaccaaaatcagaattattccatatctcatgttaccttctctagaagaacttgaactttcatattgtagtaatcttgagagtttttcacctatggtag 73970  T
Q  258 cagagtttggtaataagcttaaaaccatgagtattagaggttg 300  Q
      ||||||||| |||||||||||| ||||||| ||| ||||||    
T  73971 atgagtttggtgataagcttaaaatcatgagtgttaaaggttg 74013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 74024 - 74100
Alignment:
Q  170 aggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagtcttgagagttttcc 246  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||| ||||| |||||| | ||||||||||||||||    
T  74024 aggagtattccacctctcatgttagcttctctagaagaactcgatctttcaaattgtattggtcttgagagttttcc 74100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 5921311 - 5921123
Alignment:
Q  58 aaatttagaagaattttcaattcaagattgtgaggaactaattacaattgataactcggttggttttttgcgtaaacttaaaatcttgagatttatatgt 157  Q
    ||||||||||||| ||||| ||||| |||||||| |  |||||||||| ||| |||||||||| || ||   ||||||||||||||||||| ||  | ||    
T  5921311 aaatttagaagaactttcatttcaatattgtgagaacttaattacaatggatgactcggttgggttgttagctaaacttaaaatcttgagagttggaagt 5921212  T
Q  158 tgcaacaaaatcaggattattccaactctcatgttaccttctctagaagaactcgatttttcagattgtactagtcttgagagttttcc 246  Q
    ||||| ||  ||| || | ||||| |||||| |||   ||| ||||||||||||||| ||||| ||  |  |||||| |||||||||||    
T  5921211 tgcaagaagctcaagagtcttccacctctcaagttggtttcgctagaagaactcgatctttcatatattgatagtctcgagagttttcc 5921123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 5920469 - 5920409
Alignment:
Q  195 cttctctagaagaactcgatttttcagattgtactagtcttgagagttttccgtctgtggt 255  Q
    |||||||||||||||| ||| ||||| |||||   |||||||||||||||||| |||||||    
T  5920469 cttctctagaagaactagatctttcaaattgtcagagtcttgagagttttccgcctgtggt 5920409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University