View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_29 (Length: 328)
Name: NF1433_high_29
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 32851506 - 32851207
Alignment:
| Q |
18 |
aaacaatttccttgaatttgcaccaactgaaagatccaaataagtaaatgggattgagccttcactacaatgaaagaaattacatgtcatctccataaag |
117 |
Q |
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| T |
32851506 |
aaacaatttccttgaatttgcaccaactgaaagatccaaataagtaaatgggattgacccttcactataatgaaagaaattacatgtcatctccataaag |
32851407 |
T |
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| Q |
118 |
cccaagggtaaattaattcctatgaaacaactttgagaaaattgacttttaaacttgacgtcatctcgaatcctctcaacatcgccttcaaggtgtaaag |
217 |
Q |
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| T |
32851406 |
cccaagggtaaattaattcctatgaaacaactttgagaaaattgacttttaaacttgacgccatctcgaattctctcaacatcgccttcaaggtgtaaag |
32851307 |
T |
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| Q |
218 |
attttcaacagttgttttccctatacaaagagtatcatccgcatatgaagatgtgaaatcaccgtccctcccctaacaacctcaaaacccttatacctat |
317 |
Q |
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| T |
32851306 |
attttcaacagttgtttcccctatacaaagagtatcatccgcatatgaagatgtgaaatcaccgtccctcctctaacaacctcaaaacccttatacctat |
32851207 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 40387424 - 40387473
Alignment:
| Q |
214 |
aaagattttcaacagttgttttccctatacaaagagtatcatccgcatat |
263 |
Q |
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| T |
40387424 |
aaagattttccaccgttggtttccctatacaaagagtgtcatcggcatat |
40387473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 8505854 - 8505938
Alignment:
| Q |
179 |
catctcgaatcctctcaacatcgccttcaaggtgtaaagattttcaacagttgttttccctatacaaagagtatcatccgcatat |
263 |
Q |
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|||||| || |||||||| | |||||||| || ||||||| ||||| || | ||||||||||||||| |||||||| |||||| |
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| T |
8505854 |
catctcaaaacctctcaaaagcgccttcattgtcaaaagattctcaaccgtagctttccctatacaaagggtatcatcggcatat |
8505938 |
T |
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