View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_3 (Length: 709)
Name: NF1433_high_3
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 12 - 693
Target Start/End: Complemental strand, 3593946 - 3593264
Alignment:
| Q |
12 |
cattttagccaaataagatctgaatgtgaattatgtgatccagttacatcaccaaactctgagaataagaatatcttctagggtgcaaattcatgtagta |
111 |
Q |
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| T |
3593946 |
cattttagccaaataagatctgaatgtgaattatgtgatccagttacatcaccaaactctgagaataagaatatcttctagggtgcaaattcatgtagta |
3593847 |
T |
|
| Q |
112 |
ctacagaggtctattttttgttggttaatagctcagcaataatataagtaacgacaagcaaaaacaaacattagaaataaacactatggaccaagatacc |
211 |
Q |
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| T |
3593846 |
ctacagaggtctattttttgttggttaatagctcagcaataatataagtaacgacaagcaaaaacaaacattagaaatgaacactatggaccaagatacc |
3593747 |
T |
|
| Q |
212 |
ctacactgttacttgtattaatttatgaaactaagacaaaaatgaaaacatcatgtgatgattatgaactacaagcccacataatagtagcaataaaata |
311 |
Q |
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| T |
3593746 |
ctacactgttacttgtattaatttatgaaactaaaacaaaaatgaaaacatcatgtgatgattatgaactacaagcccacataatagtagcaataaaata |
3593647 |
T |
|
| Q |
312 |
ttagcaaccataattctttcattctggaccagtaacaaagaatgattctcaacaagtggttgtgatgaatattgagcaatcaaatcattgttatatcact |
411 |
Q |
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| T |
3593646 |
ttagcaaccataattctttcattctggaccagtaacaaagaatgattctcaacaagtggttgtgatgaatattgagcaatcaaatcattgttatatcact |
3593547 |
T |
|
| Q |
412 |
ccaacatactatatccataagaatcttccatcacattctgtcacttcagctttgctggaccagaccccatttctatccccatcataaaccactaacaaac |
511 |
Q |
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| T |
3593546 |
ccaacatactatatccataagaatcttccatcacattctgtcacttcagctttgctggaccagaccccatttctatccccatcataaaccactaacaaac |
3593447 |
T |
|
| Q |
512 |
aattaaaaataataataaccttcacttaaagaatgatcctaatttctaacccaattgtatacattaatttaccattttaatgtatttaaaattaatagaa |
611 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3593446 |
aattaaaaataataataaccttcacttaaagaataatcctaatttctaacccaattgtatacattaatctaccattttaatgtatttaaaattaatagaa |
3593347 |
T |
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| Q |
612 |
tgaagaatatgatacaaataa-gtaggatacacctttatatatgatcctaagataactaaataaacttcatcttcatcatcac |
693 |
Q |
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| T |
3593346 |
tgaagaatatgatacaaataaggtaggatacacctttatatatgatcctaagataactaaataaacttcatcttcatcatcac |
3593264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 670
Target Start/End: Complemental strand, 38467247 - 38467170
Alignment:
| Q |
595 |
atttaaaattaatagaatgaagaatatgatacaaata-agtaggatacacctttatata-tgatcctaagataactaa |
670 |
Q |
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|||||||| || |||||||||||||||||| ||| || |||||||||| ||||||||| |||||| ||| ||||||| |
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| T |
38467247 |
atttaaaaatagtagaatgaagaatatgattcaattagggtaggatacatctttatatagtgatcccaagttaactaa |
38467170 |
T |
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