View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_32 (Length: 323)
Name: NF1433_high_32
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 46407854 - 46407569
Alignment:
| Q |
25 |
ccttctccacttgacgcattattatttcattacaaaagagagaaaattgtggcaaatgattcaaatctctccagagttgtggcggggaaaatatttcctt |
124 |
Q |
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| T |
46407854 |
ccttctccacttgacgcattattatttcattacaaaagagagaaaattgtggcaaatgattcaagtctctcgagagttatggcggggaaaatatttcctt |
46407755 |
T |
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| Q |
125 |
aatgtacattaaacaattttatgcgtttacatgaaatttatttctaagtgnnnnnnnnnnnnncttgaaatttcttctcactattcaaccatttcagtct |
224 |
Q |
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| T |
46407754 |
aatatacattaaacaattttatgcgtttacatgaaattta-ttctaagtcaaaaaaggaaaaacttgaaatttcttctcactattcaaccatttcagtct |
46407656 |
T |
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| Q |
225 |
ctgataaacaattatcgaactagagcaaatataacacgaaagggccacaaaaagaaattgcttgacttcacagtaagcatgcaagat |
311 |
Q |
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| T |
46407655 |
ctgataaacaattatcgaactagagcaaatataacacgaaagggccacaaaaagaaattgcttgacttcacagtaagcatgcaagat |
46407569 |
T |
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