View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_42 (Length: 282)
Name: NF1433_high_42
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_42 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 40888166 - 40888422
Alignment:
| Q |
20 |
ccacattatgaccaacttaatttcattcttagtcccttcaaattccaacagaaggatgcatttgattaaaaccttgaaattcgaggtaccatgttgatct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888166 |
ccacattatgaccaacttaatttcattcttagtcccttcaaattccaacagaaggatgcatttgattaaaaccttgaaattcgaggtaccatgttgatct |
40888265 |
T |
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| Q |
120 |
ggaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactcctttacttccaaaataacacttgtggtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888266 |
ggaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactcctttacttccaaaataacacttgtggtt |
40888365 |
T |
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| Q |
220 |
attttcttactacggtgtttgcttcttgttatttgttttccagctgagtattatcta |
276 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40888366 |
attttcttactatggtgtttgcttcttgttatttgttttccagctgagtattgtcta |
40888422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 44139397 - 44139654
Alignment:
| Q |
20 |
ccacattatgaccaacttaatttcattcttagtcccttcaaattccaacagaaggatgcatttgattaaaaccttgaaattcgaggtaccatgttgatct |
119 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139397 |
ccacattatgaccaacttaatttcattcc-agtcccttcaaattccaacagaaggatgcatttgattaaaaccttgaaattcgaggtaccatgttgatct |
44139495 |
T |
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| Q |
120 |
ggaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactcctttacttccaaaataacacttgtggtt |
219 |
Q |
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| T |
44139496 |
ggaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactcctttacttccataataacacttgtggtt |
44139595 |
T |
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| Q |
220 |
attttcttactacggtgtttgcttcttgttatttgttttccagctgagtattatctacc |
278 |
Q |
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| T |
44139596 |
attttcttactatggtgtttgcttcttgttatttgttttccagctgagtattgtctacc |
44139654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 47892652 - 47892582
Alignment:
| Q |
119 |
tggaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttac |
189 |
Q |
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| T |
47892652 |
tggaatatcgataatgtgagggattagattggtacaatcctacaatttcaaggaccaaattgagtatttac |
47892582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 51547876 - 51547808
Alignment:
| Q |
123 |
atatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactc |
191 |
Q |
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| T |
51547876 |
atatcgataatgtgagggactacattgacacaatactataatttcaaggaccactttgagtatttactc |
51547808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 27970073 - 27970139
Alignment:
| Q |
121 |
gaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtattt |
187 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||| || ||| |||||||| |||| |
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| T |
27970073 |
gaatatcaataatgtgagggactagattgatacaatcctacaattttagtgaccaatttgagcattt |
27970139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 12241394 - 12241351
Alignment:
| Q |
122 |
aatatcgataatgtgagggactagattgatacagtcctacaatt |
165 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
12241394 |
aatatcgataatgtgagggactacattgatacagccctacaatt |
12241351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 33181 - 33227
Alignment:
| Q |
119 |
tggaatatcgataatgtgagggactagattgatacagtcctacaatt |
165 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
33181 |
tggaatatcgataatgtgaaagactagatttatacagtcctacaatt |
33227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 5361168 - 5361094
Alignment:
| Q |
122 |
aatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactccttta |
196 |
Q |
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|||||||||||| ||||||||| |||||||||| || ||||||| | | ||| ||||||||||| ||||| |||| |
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| T |
5361168 |
aatatcgataatatgagggactggattgatacaatcttacaattttgatgaccaatttgagtatgtactcattta |
5361094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 2371781 - 2371738
Alignment:
| Q |
119 |
tggaatatcgataatgtgagggactagattgatacagtcctaca |
162 |
Q |
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||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
2371781 |
tggaatatccattatgttagggactagattgatacagtcctaca |
2371738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 21873712 - 21873761
Alignment:
| Q |
129 |
ataatgtgagggactagattgatacagtcctacaattctaaggactaatt |
178 |
Q |
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|||||||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
21873712 |
ataatgtgagagactagattgatacaaacctacaatttcaaggactaatt |
21873761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 17775940 - 17775894
Alignment:
| Q |
119 |
tggaatatcgataatgtgagggactagattgatacagtcctacaatt |
165 |
Q |
| |
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|||| |||| |||||||||||| |||||| ||||||||||||||||| |
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| T |
17775940 |
tggagtatcaataatgtgaggggctagatcgatacagtcctacaatt |
17775894 |
T |
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