View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_high_46 (Length: 277)

Name: NF1433_high_46
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_high_46
NF1433_high_46
[»] chr5 (8 HSPs)
chr5 (16-267)||(10046129-10046380)
chr5 (22-267)||(39676079-39676324)
chr5 (22-267)||(10866515-10866760)
chr5 (22-267)||(10873545-10873790)
chr5 (22-267)||(10878616-10878861)
chr5 (22-267)||(10883687-10883932)
chr5 (22-267)||(10887605-10887850)
chr5 (166-251)||(37948119-37948204)
[»] chr8 (1 HSPs)
chr8 (166-257)||(30709594-30709685)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 10046129 - 10046380
Alignment:
Q  16 ctactttccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcgg 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10046129 ctactttccatggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgcaaacgtgcgg 10046228  T
Q  116 cggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046229 cggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttg 10046328  T
Q  216 tgagatgccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046329 tgagatgccgataggatttgttcagattccggtgggagttgccggacctttg 10046380  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 39676079 - 39676324
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    |||||||||||||| ||||||||  |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| || | ||    
T  39676079 tccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtga 39676178  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| |||||||||||||| |||| ||||||    |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  39676179 ttaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagat 39676278  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  39676279 gccaatagggtttgttcagattccggtgggtgttgccggtcctttg 39676324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 10866515 - 10866760
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| ||    |    
T  10866515 tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata 10866614  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||||||||||||||||||||||| ||||||    |||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||    
T  10866615 ttaggaaccaagcggtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgactacaattctatattaggacagtgttgcgagat 10866714  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||||    
T  10866715 gccgatagggtttgttcagattccggtgggtgttgccggtcctttg 10866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 10873790 - 10873545
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| ||    |    
T  10873790 tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata 10873691  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| ||||||||||||||||||| ||||||    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  10873690 ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagat 10873591  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  10873590 gcccatagggtttgttcagattccggtgggtgttgccggtcctttg 10873545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 10878861 - 10878616
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| ||    |    
T  10878861 tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata 10878762  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| ||||||||||||||||||| ||||||    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  10878761 ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagat 10878662  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  10878661 gcccatagggtttgttcagattccggtgggtgttgccggtcctttg 10878616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 10883932 - 10883687
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| ||    |    
T  10883932 tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata 10883833  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| ||||||||||||||||||| ||||||    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  10883832 ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagat 10883733  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  10883732 gcccatagggtttgttcagattccggtgggtgttgccggtcctttg 10883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 10887850 - 10887605
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||| | ||  |||||||||| ||||| ||||| || || ||||||||||||   ||||| ||   ||    
T  10887850 tccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccttcttactcccttgagtcgaagctcggagattgccgtcgtgcagcaaaga 10887751  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| |||||||| |||||||||| ||||||    |||||||| ||| |||||||||| || ||||| ||||||||||||||||| |||||    
T  10887750 ttaggaaccaagcagtggagagggttaccggaaggtcacttgaaggtttaccgatgaaaggttttgactacgattctatattaggacagtgttgcgagat 10887651  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||    
T  10887650 gccgatagggtttgttcaaattccggtgggtgttgccggtcctttg 10887605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 37948119 - 37948204
Alignment:
Q  166 ggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtggg 251  Q
    ||||||||| | ||||| |||||||| ||  |||| ||||| ||||||||||| |||||| |||| | | |||| |||||||||||    
T  37948119 ggtttaccattagaaggatttgattacgaagcgattttagggcagtgttgtgaaatgccggtagggtatattcaaattccggtggg 37948204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 30709685 - 30709594
Alignment:
Q  166 ggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgc 257  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| || |||||    
T  30709685 ggtttaccgttggaaggttttgattacgattcgatattgggacagtgttgtgagatgccgatagggtttgttcaaattccggttggtgttgc 30709594  T

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