View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_high_71 (Length: 237)

Name: NF1433_high_71
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_high_71
NF1433_high_71
[»] chr8 (35 HSPs)
chr8 (3-221)||(39594492-39594708)
chr8 (7-131)||(1876489-1876614)
chr8 (3-131)||(12002241-12002370)
chr8 (6-117)||(11533221-11533332)
chr8 (6-147)||(14016873-14017016)
chr8 (7-131)||(31844224-31844349)
chr8 (7-110)||(38019426-38019528)
chr8 (7-104)||(44220717-44220814)
chr8 (6-110)||(2376734-2376838)
chr8 (7-106)||(32271170-32271269)
chr8 (19-113)||(20522937-20523031)
chr8 (46-131)||(37564378-37564464)
chr8 (3-136)||(39691117-39691251)
chr8 (9-131)||(31264971-31265094)
chr8 (7-65)||(36907841-36907899)
chr8 (7-131)||(1445140-1445265)
chr8 (7-110)||(38047616-38047720)
chr8 (14-113)||(7627861-7627960)
chr8 (19-116)||(30486599-30486696)
chr8 (7-59)||(34722784-34722837)
chr8 (19-131)||(35501086-35501199)
chr8 (3-106)||(44907218-44907322)
chr8 (74-113)||(25279922-25279961)
chr8 (19-131)||(24869388-24869497)
chr8 (20-113)||(5218056-5218149)
chr8 (8-61)||(26014762-26014815)
chr8 (7-83)||(41959988-41960065)
chr8 (37-131)||(42760184-42760278)
chr8 (90-131)||(33724672-33724713)
chr8 (7-60)||(35592485-35592538)
chr8 (22-131)||(42801053-42801162)
chr8 (7-131)||(1773808-1773934)
chr8 (46-110)||(30158108-30158172)
chr8 (7-111)||(34336480-34336584)
chr8 (99-131)||(37427294-37427326)
[»] chr7 (28 HSPs)
chr7 (6-129)||(8237927-8238050)
chr7 (6-105)||(19619993-19620092)
chr7 (6-131)||(34299749-34299875)
chr7 (7-111)||(43492208-43492313)
chr7 (6-106)||(24299137-24299237)
chr7 (7-131)||(44452048-44452172)
chr7 (19-116)||(3267629-3267726)
chr7 (19-111)||(46716174-46716266)
chr7 (7-104)||(5482415-5482511)
chr7 (19-113)||(26872803-26872898)
chr7 (6-140)||(26871737-26871871)
chr7 (19-131)||(36973310-36973424)
chr7 (7-131)||(5907799-5907922)
chr7 (5-129)||(34681669-34681793)
chr7 (19-111)||(41150034-41150126)
chr7 (9-106)||(39241570-39241668)
chr7 (7-108)||(24610845-24610946)
chr7 (15-67)||(32699395-32699447)
chr7 (15-113)||(39316308-39316406)
chr7 (7-83)||(7432659-7432736)
chr7 (8-136)||(18926297-18926425)
chr7 (50-110)||(6392177-6392237)
chr7 (47-111)||(27338257-27338321)
chr7 (7-110)||(23682460-23682561)
chr7 (15-131)||(35599817-35599934)
chr7 (7-131)||(47507584-47507709)
chr7 (5-136)||(3683393-3683523)
chr7 (7-106)||(25036971-25037071)
[»] chr1 (35 HSPs)
chr1 (7-136)||(48947173-48947303)
chr1 (7-131)||(39973866-39973991)
chr1 (9-148)||(42573778-42573918)
chr1 (6-131)||(16113893-16114021)
chr1 (7-131)||(35259053-35259178)
chr1 (5-116)||(3047857-3047968)
chr1 (7-110)||(33791746-33791849)
chr1 (6-146)||(35543409-35543550)
chr1 (7-114)||(40286850-40286957)
chr1 (14-114)||(48900-49000)
chr1 (6-131)||(49478786-49478913)
chr1 (22-108)||(31042999-31043085)
chr1 (1-111)||(40053288-40053398)
chr1 (20-131)||(34861232-34861344)
chr1 (15-96)||(290601-290682)
chr1 (7-112)||(10355034-10355139)
chr1 (14-114)||(290863-290963)
chr1 (21-131)||(31807800-31807912)
chr1 (7-83)||(38172668-38172744)
chr1 (74-131)||(39912284-39912342)
chr1 (7-108)||(24034055-24034156)
chr1 (6-66)||(30548313-30548373)
chr1 (7-110)||(4040889-4040992)
chr1 (37-131)||(4521045-4521138)
chr1 (7-72)||(9931809-9931874)
chr1 (7-131)||(34596127-34596249)
chr1 (6-95)||(51904575-51904664)
chr1 (74-129)||(5250975-5251031)
chr1 (74-110)||(46592543-46592579)
chr1 (98-141)||(6170982-6171025)
chr1 (6-131)||(40341575-40341702)
chr1 (74-128)||(37976806-37976860)
chr1 (7-60)||(40203085-40203138)
chr1 (19-110)||(27934747-27934839)
chr1 (6-61)||(30350925-30350978)
[»] chr4 (28 HSPs)
chr4 (7-131)||(53261532-53261657)
chr4 (5-131)||(52650695-52650822)
chr4 (5-131)||(36876062-36876188)
chr4 (14-131)||(2063450-2063567)
chr4 (7-131)||(21687592-21687717)
chr4 (5-106)||(45743315-45743416)
chr4 (31-131)||(49951721-49951822)
chr4 (7-116)||(17970800-17970907)
chr4 (42-131)||(21241102-21241191)
chr4 (9-107)||(25042743-25042837)
chr4 (6-131)||(31262892-31263015)
chr4 (3-110)||(47937859-47937966)
chr4 (19-131)||(49795119-49795231)
chr4 (6-62)||(20022234-20022290)
chr4 (19-111)||(37461492-37461583)
chr4 (44-131)||(49532295-49532382)
chr4 (7-117)||(40252645-40252754)
chr4 (27-131)||(23136534-23136639)
chr4 (7-83)||(27963121-27963197)
chr4 (8-65)||(3179014-3179072)
chr4 (6-123)||(38354487-38354605)
chr4 (7-83)||(35153274-35153351)
chr4 (35-111)||(24369402-24369478)
chr4 (20-131)||(27748415-27748526)
chr4 (9-131)||(51291060-51291183)
chr4 (14-112)||(24546722-24546820)
chr4 (19-114)||(12618713-12618808)
chr4 (6-110)||(50617492-50617596)
[»] chr5 (22 HSPs)
chr5 (14-113)||(4695065-4695164)
chr5 (19-108)||(14309106-14309195)
chr5 (6-77)||(16636669-16636740)
chr5 (6-105)||(21259424-21259523)
chr5 (14-131)||(25437888-25438007)
chr5 (7-106)||(38594938-38595037)
chr5 (7-110)||(10228315-10228417)
chr5 (9-107)||(26432261-26432359)
chr5 (7-72)||(27794866-27794931)
chr5 (7-106)||(17774289-17774388)
chr5 (19-106)||(36609150-36609237)
chr5 (20-110)||(12221433-12221523)
chr5 (6-95)||(22601786-22601875)
chr5 (19-112)||(29829584-29829677)
chr5 (41-108)||(41568708-41568775)
chr5 (15-100)||(26686667-26686752)
chr5 (15-100)||(26956398-26956483)
chr5 (7-131)||(10410424-10410550)
chr5 (7-60)||(31672458-31672511)
chr5 (38-111)||(39177677-39177749)
chr5 (7-55)||(10051781-10051829)
chr5 (6-82)||(26453647-26453723)
[»] chr3 (22 HSPs)
chr3 (19-131)||(45757903-45758016)
chr3 (9-111)||(48551035-48551137)
chr3 (7-131)||(3026991-3027117)
chr3 (6-131)||(25317779-25317905)
chr3 (6-106)||(12140145-12140246)
chr3 (7-99)||(14146107-14146199)
chr3 (7-131)||(24313525-24313651)
chr3 (7-106)||(20821303-20821403)
chr3 (21-131)||(29611994-29612106)
chr3 (17-118)||(53040457-53040558)
chr3 (52-143)||(16678887-16678978)
chr3 (15-115)||(22772851-22772952)
chr3 (19-131)||(37388381-37388494)
chr3 (15-106)||(45584343-45584432)
chr3 (42-129)||(46725633-46725721)
chr3 (7-116)||(1511324-1511434)
chr3 (9-67)||(33072120-33072178)
chr3 (46-116)||(54290823-54290893)
chr3 (14-108)||(54911199-54911293)
chr3 (27-113)||(28691951-28692037)
chr3 (14-131)||(43803944-43804061)
chr3 (74-141)||(30082821-30082889)
[»] chr2 (38 HSPs)
chr2 (7-131)||(6334679-6334804)
chr2 (9-116)||(24389632-24389739)
chr2 (14-131)||(565706-565825)
chr2 (6-110)||(33454964-33455068)
chr2 (14-99)||(33068557-33068642)
chr2 (6-116)||(12848478-12848588)
chr2 (9-111)||(6083911-6084013)
chr2 (7-116)||(3074070-3074177)
chr2 (7-131)||(431640-431766)
chr2 (27-113)||(4654988-4655074)
chr2 (6-80)||(30523029-30523103)
chr2 (6-111)||(6411380-6411485)
chr2 (7-95)||(12205530-12205619)
chr2 (7-131)||(33634805-33634930)
chr2 (15-131)||(18684334-18684453)
chr2 (15-131)||(29685719-29685836)
chr2 (7-83)||(42342497-42342572)
chr2 (21-111)||(8964387-8964477)
chr2 (5-111)||(13538391-13538497)
chr2 (39-131)||(30869601-30869692)
chr2 (25-110)||(12762896-12762981)
chr2 (14-107)||(25626947-25627040)
chr2 (6-83)||(32066745-32066822)
chr2 (7-79)||(3191187-3191259)
chr2 (6-106)||(9049156-9049256)
chr2 (14-65)||(15806054-15806105)
chr2 (3-141)||(21277517-21277655)
chr2 (7-112)||(11385446-11385552)
chr2 (46-131)||(32859759-32859845)
chr2 (20-96)||(9448465-9448542)
chr2 (3-95)||(3666441-3666533)
chr2 (24-131)||(3882590-3882698)
chr2 (34-136)||(18223083-18223186)
chr2 (44-131)||(30822764-30822851)
chr2 (89-131)||(36480374-36480417)
chr2 (7-67)||(28695619-28695680)
chr2 (3-72)||(43678554-43678623)
chr2 (35-131)||(16717585-16717680)
[»] scaffold0010 (1 HSPs)
scaffold0010 (14-111)||(26696-26793)
[»] chr6 (13 HSPs)
chr6 (6-95)||(10364754-10364843)
chr6 (7-129)||(29716771-29716895)
chr6 (14-131)||(13445745-13445863)
chr6 (7-109)||(23344568-23344671)
chr6 (6-115)||(354585-354694)
chr6 (42-83)||(34552365-34552406)
chr6 (9-111)||(3753103-3753206)
chr6 (9-111)||(3769326-3769429)
chr6 (37-131)||(30509290-30509385)
chr6 (7-128)||(34552510-34552632)
chr6 (5-131)||(25028703-25028829)
chr6 (19-111)||(5704578-5704668)
chr6 (44-131)||(34185070-34185158)
[»] scaffold0236 (1 HSPs)
scaffold0236 (6-95)||(19578-19667)
[»] scaffold0053 (1 HSPs)
scaffold0053 (52-116)||(5752-5816)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 39594492 - 39594708
Alignment:
Q  3 gatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgct 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  39594492 gatcttaaatgataactttttatgaaagtttgtataatcagtgtaatgaaaattgaaaactttgatatttataaagaataatttcttaatttagcattct 39594591  T
Q  103 taaagagtgtcccgaggcactcgttaacacaacctttaaaatataacaaagttaaacttaaacacagatgaaagattgaaatattgtttgttagtagtgg 202  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39594592 taaagagtgttccgaggcactcgttaaca-aacctttaaaatataac-aagttaaacttaaacacagatgaatgattgaaatattgtttgttagtagtgg 39594689  T
Q  203 tggatttaggtgtgatttg 221  Q
    |||||||||||||||||||    
T  39594690 tggatttaggtgtgatttg 39594708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 1876489 - 1876614
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||  ||||||||| | ||||||||||||||||||||    
T  1876489 ttaaatggtaattttttatgaaagtttgtgtaatcagtgcattggaaattgaaaattttgacattttaaaagaataattacttaatttagcatgcttaaa 1876588  T
Q  107 gagtgtccc-gaggcactcgttaaca 131  Q
    ||||| ||| | ||||||||||||||    
T  1876589 gagtgccccgggggcactcgttaaca 1876614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 12002370 - 12002241
Alignment:
Q  3 gatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgct 102  Q
    |||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | |||| |||||||||| | |||||||||| || ||    
T  12002370 gatcttaaatagtaactttttataaaaatttgtgtaatcagtgcattggaaattgaaaacttttacatttttaaagaataattacttaatttagtatact 12002271  T
Q  103 taaagagtgtcccgagg-cactcgttaaca 131  Q
    ||||||||| |||||||  |||||||||||    
T  12002270 taaagagtgccccgaggatactcgttaaca 12002241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 11533332 - 11533221
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||| |||| |||||||||| || |||||||| |||| ||||    
T  11533332 cttaaatggtaattttttatgaaagtttgtgccttcagtgcattggaaattgaaaactttgacatttttaaagaataatttattaatttaacatgtttaa 11533233  T
Q  106 agagtgtcccga 117  Q
    ||||||||||||    
T  11533232 agagtgtcccga 11533221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 14016873 - 14017016
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| |||| ||||||| ||||||||| | ||||||||||||||||||||||||||| | ||||  ||||||| | | ||| |||||||||||||||    
T  14016873 cttaaatagtaattttttataaaagtttgtgtgatcagtgcattggaaattgaaaacttttaaattttgaaagaatcattactttatttagcatgcttaa 14016972  T
Q  106 agagtgtccc-gaggcactcgttaac-acaacctttaaaatata 147  Q
    |||||| ||| |||||||| |||||| | |||||||||| ||||    
T  14016973 agagtgccccggaggcactagttaacaagaacctttaaagtata 14017016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 31844224 - 31844349
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||  ||| ||| |||||| | |||||||||| ||  ||||    
T  31844224 ttaaatagtaactttttatgaaagtttgtataatgaagtgcattggaaattcaaaactttgacttttttaaggaataattacttaatttagaatatttaa 31844323  T
Q  106 agagtgtcccgaggcactcgttaaca 131  Q
    |||||| || | ||||||||||||||    
T  31844324 agagtgccctggggcactcgttaaca 31844349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 38019426 - 38019528
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||||||||| |||||||||||| ||| ||||| ||||||| || |||||||||||| | | || |||||||||| ||||||||||||||||||||||    
T  38019426 ttaaatggtaacattttatgaaagtatgtgtaatc-gtgcattagagattgaaaactttaaaaattttaaagaataatttcttaatttagcatgcttaaa 38019524  T
Q  107 gagt 110  Q
    ||||    
T  38019525 gagt 38019528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 44220717 - 44220814
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    ||||||||||| |||||||| | |||||| |||| |||||||||||||||||||||||||| ||||  ||||||||| | ||||||||| ||||||||    
T  44220717 ttaaatggtaaatttttatggacgtttgtgtaatgagtgcattggaaattgaaaactttgacattttaaaagaataattacttaatttaacatgctta 44220814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 2376734 - 2376838
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| |||||||||||||||||||| |||||| | | | || |||||||||||||||||||||| |||||||||| |  ||||||||  ||||||||    
T  2376734 cttaaatagtaactttttatgaaagtttatataattaatacgttagaaattgaaaactttgatatttttaaagaataattatttaatttaaaatgcttaa 2376833  T
Q  106 agagt 110  Q
    |||||    
T  2376834 agagt 2376838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 32271269 - 32271170
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||||||| ||||||||| |||||||| |||||| || ||| ||||||||||||||| | |||| |||| ||||| |||||||||||  |||||||||    
T  32271269 ttaaatggtatctttttatggaagtttgtgtaatcaatgaattagaaattgaaaactttaacatttttaaaaaataatttcttaatttaaaatgcttaaa 32271170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 20523031 - 20522937
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    ||||||||||||||| | |||| ||||||||| |||||||||||||| | ||||  ||||||||| | ||||| ||||||||||||||| |||||    
T  20523031 tttttatgaaagtttatgtaattagtgcattgaaaattgaaaacttttaaattttgaaagaataattacttaacttagcatgcttaaagggtgtc 20522937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 37564378 - 37564464
Alignment:
Q  46 cattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtccc-gaggcactcgttaaca 131  Q
    ||||||||||||||   |||||  ||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  37564378 cattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtgtcccagaggcactcgttaaca 37564464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 39691117 - 39691251
Alignment:
Q  3 gatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgct 102  Q
    |||||||||| |||| ||||||||||| ||||| || ||| ||||||| ||||||||   |||||  ||| |||||||||| || ||||| | | |||||    
T  39691117 gatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgct 39691216  T
Q  103 taaagagtgtcccga-ggcactcgttaacacaacc 136  Q
    ||||||||||| ||| |||||||||||||| ||||    
T  39691217 taaagagtgtctcgagggcactcgttaacaaaacc 39691251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 31265094 - 31264971
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    |||| ||||||||||||||||  |||| || | | | ||||||||||||||   |||||  ||| |||||||||||||| ||||||||||||||||||||    
T  31265094 aaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataacttcctaatttagcatgcttaaaga 31264995  T
Q  109 gtgtc-ccgaggcactcgttaaca 131  Q
    ||| | | | ||||||||||||||    
T  31264994 gtgccacaggggcactcgttaaca 31264971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 36907899 - 36907841
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaacttt 65  Q
    |||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  36907899 ttaaatagtaactttttataaaagtttgtgtaatcattgcattggaaattgaaaacttt 36907841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 1445140 - 1445265
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||||||||||||| | ||||||||| |||| | |||||||| |||||||| ||||||| |||  ||||||   | | |||||||||| | ||||||    
T  1445140 ttaaatggtaactttttctaaaagtttgtgtaataaagtgcattgaaaattgaacactttgacattattaaagagatattacttaatttagaaagcttaa 1445239  T
Q  106 agagtgtcccgaggcactcgttaaca 131  Q
    ||||||  ||||| ||||||||||||    
T  1445240 agagtgatccgagacactcgttaaca 1445265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 38047616 - 38047720
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| ||||||| ||||||||||||| |||| | |||||||  ||||| |||  ||||| |||||||||||| || | |||||||||| ||||||||    
T  38047616 ttaaatgataactttatatgaaagtttgtgtaataaagtgcattaaaaattaaaatttttgacatttataaagaaaaattacttaatttagaatgcttaa 38047715  T
Q  106 agagt 110  Q
    |||||    
T  38047716 agagt 38047720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 7627861 - 7627960
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    |||| ||||||||||||||||| | ||||||| ||| |||||| |||||||| | |||| | || ||||| | ||||||||| |||| ||||||||||||    
T  7627861 gtaattttttatgaaagtttgtgtgatcagtgtattagaaattaaaaactttcacattttttaaaaataattacttaatttaacatgtttaaagagtgtc 7627960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 30486696 - 30486599
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccg 116  Q
    ||||||| ||||||||| |||||||||||||  ||||| |||||||| | ||||  ||||||||| | ||| ||||| ||| |||||| |||||||||    
T  30486696 tttttataaaagtttgtgtaatcagtgcattataaattaaaaacttttaaattttaaaagaataattactttatttaacatacttaaaaagtgtcccg 30486599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 34722784 - 34722837
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataat-cagtgcattggaaattgaa 59  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  34722784 ttaaatggtaactttttatgaaagtttgtataataaagtgcattgaaaattgaa 34722837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 35501086 - 35501199
Alignment:
Q  19 tttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccga 117  Q
    ||||||| ||||||||| |||| | |||||||||||||| |||||||| ||||||  ||||| ||| | || ||| ||| ||| |||||||||||| ||     
T  35501086 tttttataaaagtttgtgtaataaagtgcattggaaattaaaaactttaatattttcaaagattaattactaaatgtagaatgtttaaagagtgtcacgg 35501185  T
Q  118 ggcactcgttaaca 131  Q
     |||||||||||||    
T  35501186 agcactcgttaaca 35501199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 44907322 - 44907218
Alignment:
Q  3 gatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattg-aaaactttgatatttataaagaataacttcttaatttagcatgc 101  Q
    |||||||||| |||| |||||||||||||| || | || ||||||||| |||||| |||| ||||| |||| |||| ||||| | |||||||||| | ||    
T  44907322 gatcttaaatagtaaatttttatgaaagttagtgttattagtgcattgaaaattgaaaaagtttgacatttttaaaaaataattacttaatttagaaagc 44907223  T
Q  102 ttaaa 106  Q
    |||||    
T  44907222 ttaaa 44907218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 25279961 - 25279922
Alignment:
Q  74 taaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  25279961 taaagaataacttcctaatttagcatgcttaaagagtgtc 25279922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 24869497 - 24869388
Alignment:
Q  19 tttttatgaaa-gtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc-ccg 116  Q
    ||||||||||| |||| | |||| ||||||||||||||||||||     |||||| || ||||||| | |||||||||||||| |||||||||| | | |    
T  24869497 tttttatgaaaagtttatgtaattagtgcattggaaattgaaaa-----atatttttagagaataattacttaatttagcatgtttaaagagtgccacag 24869403  T
Q  117 aggcactcgttaaca 131  Q
     ||||||||||||||    
T  24869402 gggcactcgttaaca 24869388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 5218056 - 5218149
Alignment:
Q  20 ttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    |||||||||||||||||||||   ||||||| ||||| |||| ||| | |||| |||||||||| || |||||||| | | |||||| ||||||    
T  5218056 ttttatgaaagtttgtataatttctgcattgaaaattaaaaattttaacatttttaaagaataattttttaatttaacgtacttaaaaagtgtc 5218149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 26014762 - 26014815
Alignment:
Q  8 taaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaa 61  Q
    ||||| |||||||||||| || |||||| ||||||||||||||||| |||||||    
T  26014762 taaatagtaactttttataaatgtttgtgtaatcagtgcattggaacttgaaaa 26014815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 41959988 - 41960065
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataat-cagtgcattggaaattgaaaactttgatatttataaagaataa 83  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||  | |||||||| | |||| ||||||||||    
T  41959988 ttaaatgataattttttatgaaagtttgtataataaagtgcattggaagcttaaaactttaacatttttaaagaataa 41960065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 42760184 - 42760278
Alignment:
Q  37 taatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgaggcactcgttaaca 131  Q
    |||||| |||||||||||||||||  |||||| ||| ||  |||||| ||||   ||| | ||||||||||||||||| | || |||||||||||    
T  42760184 taatcaatgcattggaaattgaaacatttgatttttttatggaataatttctccttttggaatgcttaaagagtgtccaggggaactcgttaaca 42760278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 33724672 - 33724713
Alignment:
Q  90 aatttagcatgcttaaagagtgtcccgaggcactcgttaaca 131  Q
    ||||||| ||| |||||||||||| |||||||||||||||||    
T  33724672 aatttaggatgtttaaagagtgtcacgaggcactcgttaaca 33724713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 35592538 - 35592485
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaa 60  Q
    |||||||||||||||||||| || ||||| | |||| ||| |||||||||||||    
T  35592538 ttaaatggtaactttttatggaaatttgtctgatcattgccttggaaattgaaa 35592485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 42801162 - 42801053
Alignment:
Q  22 ttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgaggca 121  Q
    |||||||| | ||| |||| | ||||||| |||||||||  ||||   ||| |||||||||| | |||| ||||| || |||||| |||||| || ||||    
T  42801162 ttatgaaaatgtgtgtaattaatgcattgaaaattgaaatatttgccttttgtaaagaataattacttattttagaatacttaaaaagtgtcacggggca 42801063  T
Q  122 ctcgttaaca 131  Q
    ||||||||||    
T  42801062 ctcgttaaca 42801053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 1773808 - 1773934
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaac--tttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||| ||||  ||||||||||||  ||  ||| ||||||||||||||||||||   ||||| |||| |||| |||||   |||||||||| | |||||    
T  1773808 ttaaatagtaaacttttatgaaagtaagtgcaattagtgcattggaaattgaaaaaagtttgacattt-taaaaaataataacttaatttagaaagctta 1773906  T
Q  105 aagagtgtcccg-aggcactcgttaaca 131  Q
    |||| || |||| |||||||||||||||    
T  1773907 aagactgccccggaggcactcgttaaca 1773934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 30158108 - 30158172
Alignment:
Q  46 cattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagt 110  Q
    ||||||||||| |||||||| | ||||  ||||||||| |  ||||||||| |||||||||||||    
T  30158108 cattggaaattaaaaacttttacattttcaaagaataattatttaatttagaatgcttaaagagt 30158172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 34336480 - 34336584
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| |||| ||||| | ||||||| |  ||||| ||||||||||||||||   |||||  ||| |||||||||| ||||| ||| || || ||||||    
T  34336480 ttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgacttttttaaagaataatttctttattaagaatccttaaa 34336579  T
Q  107 gagtg 111  Q
    |||||    
T  34336580 gagtg 34336584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 37427294 - 37427326
Alignment:
Q  99 tgcttaaagagtgtcccgaggcactcgttaaca 131  Q
    |||||||||||||||| ||||||||||||||||    
T  37427294 tgcttaaagagtgtccggaggcactcgttaaca 37427326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 8238050 - 8237927
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| |||| |||||||||| | |||||||||| || |||||    
T  8238050 cttaaatggtaactttttatgaaagtttgtgtaatcagtgcattgaaaaatgaaaactttgacatttttaaagaataattacttaatttagtatacttaa 8237951  T
Q  106 agagtgtcccgaggcactcgttaa 129  Q
    | | ||||| ||||||||||||||    
T  8237950 ataatgtcctgaggcactcgttaa 8237927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 19620092 - 19619993
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  19620092 cttaaatagtaactttttatgaaaagttgtataatcagtgcattggaaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaa 19619993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 34299749 - 34299875
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |||| |||||||||| | |||||| ||||||||||||    
T  34299749 cttaaatagtaactttttatgaaagtttgtgtaatcagtgctttgtaaattgaaaactttgacatttttaaagaataattgcttaatctagcatgcttaa 34299848  T
Q  106 agagtgtccc-gaggcactcgttaaca 131  Q
    | |||| ||| | ||||||||||||||    
T  34299849 aaagtgccccgggggcactcgttaaca 34299875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 43492208 - 43492313
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||||||||||||||| ||||||||| |||| | ||||||||||||||| ||| ||||| |||| |||||||||| | |||||||||| ||||||||    
T  43492208 ttaaatggtaactttttattaaagtttgtgtaataaagtgcattggaaattgtaaattttgacatttctaaagaataattacttaatttagaatgcttaa 43492307  T
Q  106 agagtg 111  Q
    ||||||    
T  43492308 agagtg 43492313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 24299137 - 24299237
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||  |||||||||||||||  ||||||||||||||||||||||||| |||| ||||| |||| ||| |||||| ||||||||||| |||||||||    
T  24299137 cttaaataataactttttatgaaaagttgtataatcagtgcattggaaattaaaaaatttgacatttttaaggaataatttcttaatttaacatgcttaa 24299236  T
Q  106 a 106  Q
    |    
T  24299237 a 24299237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 44452048 - 44452172
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||| |||| ||||||||||||||||| |||| | ||||||||||||||||||  |||||||||| |||| ||||| | |||||||||| ||| ||||    
T  44452048 ttaaatagtaattttttatgaaagtttgtgtaataaagtgcattggaaattgaaacttttgatatttttaaataataattacttaatttagaatgtttaa 44452147  T
Q  106 agagtgtcccgaggcactcgttaaca 131  Q
    ||||||| | | ||||||||||||||    
T  44452148 agagtgt-ctggggcactcgttaaca 44452172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 3267629 - 3267726
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccg 116  Q
    ||||||| ||||||||| |||| ||||||||| |||| ||||||||| | ||||  ||||||||| | ||| ||||||||||||||||||||||||||    
T  3267629 tttttataaaagtttgtgtaatgagtgcattgaaaatggaaaacttttaaattttaaaagaataattactttatttagcatgcttaaagagtgtcccg 3267726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 46716266 - 46716174
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    ||||||| |||||||||||||| | ||||||| | ||||||||||||||||||| |||||||||| |  ||||||||| ||| ||||||||||    
T  46716266 tttttataaaagtttgtataattaatgcattgaacattgaaaactttgatatttttaaagaataattatttaatttagaatggttaaagagtg 46716174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 5482415 - 5482511
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||| |||||||||||||||| ||||| ||| || ||||||||||| |||||||||||| ||||  ||||||||| | ||||||||||||| ||||    
T  5482415 ttaaattgtaactttttatgaaattttgtgtaaccaatgcattggaaa-tgaaaactttgacattttaaaagaataattacttaatttagcatactta 5482511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 26872803 - 26872898
Alignment:
Q  19 tttttatgaaagtttgtataatcag-tgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    ||||| |||||||||||||||| |  |||||||||||||||||  ||||||||||||||| ||||| | ||| |||||| ||||||||| ||||||    
T  26872803 tttttgtgaaagtttgtataataaaatgcattggaaattgaaacttttgatatttataaataataattacttgatttagaatgcttaaaaagtgtc 26872898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 26871871 - 26871737
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| |||| ||||||| ||||||||| ||||||||  | || ||||| |||||||| | ||||  ||||||||| | ||| |||||||||||||||    
T  26871871 cttaaatagtaattttttataaaagtttgtgtaatcagtataatgaaaattcaaaacttttaaattttaaaagaataattactttatttagcatgcttaa 26871772  T
Q  106 agagtgtcccgaggcactcgttaacacaaccttta 140  Q
    | ||||  ||| | ||||||||||||  |||||||    
T  26871771 atagtgctccgggacactcgttaacaataccttta 26871737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 36973424 - 36973310
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttat-aaagaataacttcttaatttagcatgcttaaagagtg-tcccg 116  Q
    ||||||||||| |||||||| | | ||||||||||||||||   |||||| ||| | ||||||||||||| |||||| | ||||||||||||||  || |    
T  36973424 tttttatgaaaatttgtatatttattgcattggaaattgaattatttgattttttttaaagaataacttcctaatttggaatgcttaaagagtgcaccgg 36973325  T
Q  117 aggcactcgttaaca 131  Q
    |||||||||||||||    
T  36973324 aggcactcgttaaca 36973310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 5907922 - 5907799
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| ||||  |||||||||| || || |||| ||||||||||||||  |||| ||||| ||||| ||| ||||| | |||||||||| |||||||||    
T  5907922 ttaaatagtaaacttttatgaaaattagtgtaattagtgcattggaaataaaaaagtttgacatttaaaaa-aataattacttaatttagaatgcttaaa 5907824  T
Q  107 gagtgtcccgaggcactcgttaaca 131  Q
    ||||| ||   ||||||||||||||    
T  5907823 gagtgccctagggcactcgttaaca 5907799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 34681793 - 34681669
Alignment:
Q  5 tcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||||| |||||||||||| |||  |||| || | | ||||||||||||||||   |||||  ||| |||| ||||| ||| |||||||| |||||||    
T  34681793 tcttaaatagtaactttttataaaaacttgtgtatttaatgcattggaaattgaactatttgacttttgtaaaaaataatttcctaatttagaatgctta 34681694  T
Q  105 aagagtgtcccgaggcactcgttaa 129  Q
    |||| || |||| ||||||||||||    
T  34681693 aagactgccccggggcactcgttaa 34681669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 41150034 - 41150126
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    ||||||||||| ||||||||||||||||||||  |||||||| |||| | | || |||||||||| | |||||||||  ||||||||| ||||    
T  41150034 tttttatgaaaatttgtataatcagtgcattgtgaattgaaatctttaacacttttaaagaataattacttaatttatgatgcttaaaaagtg 41150126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 39241668 - 39241570
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaa-ctttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||||||  ||||||||||| | ||||||||||| ||||||||||||||||  | ||| |||| |||||||||| | |||||||||  |||||||||    
T  39241668 aaatggtaaacttttatgaaagctagtataatcagtccattggaaattgaaaaggtatgacatttttaaagaataattgcttaatttataatgcttaaa 39241570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 24610845 - 24610946
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||| ||| ||||||| ||||||||| |||| |||| ||| |||||| |||||||| | ||||  ||||||||| |  ||||||||||||| |||||    
T  24610845 ttaaatgataattttttataaaagtttgtgtaattagtgaattagaaattcaaaactttaacattttaaaagaataattgtttaatttagcatgtttaaa 24610944  T
Q  107 ga 108  Q
    ||    
T  24610945 ga 24610946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 32699447 - 32699395
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttga 67  Q
    |||||||||||||||||||||  |||||||||||| ||||||||||| |||||    
T  32699447 taactttttatgaaagtttgtgcaatcagtgcatttgaaattgaaaattttga 32699395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 39316308 - 39316406
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    |||||||||||||||| |||| ||| |||| || |  |||||||||| ||||| |||  | |||||||| | |||||||||  ||||||||||||||||    
T  39316308 taactttttatgaaagcttgtgtaaccagtacagtaaaaattgaaaattttgacattattgaagaataattacttaatttaatatgcttaaagagtgtc 39316406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 7432736 - 7432659
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataat-cagtgcattggaaattgaaaactttgatatttataaagaataa 83  Q
    ||||||||||||||||||| |||||||||  |||  ||||||||| ||||| |||||||| |||||| |||| |||||    
T  7432736 ttaaatggtaactttttataaaagtttgtgcaataaagtgcattgaaaattaaaaactttaatatttttaaataataa 7432659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 18926425 - 18926297
Alignment:
Q  8 taaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaag 107  Q
    ||||||||||||||||||||||  |||| || ||| ||||||| ||||||||   ||| |  ||| |||||||||| ||| | |||||  ||||||||||    
T  18926425 taaatggtaactttttatgaaaagttgtgtattcaatgcattgaaaattgaactatttcacctttttaaagaataatttcatgatttaaaatgcttaaag 18926326  T
Q  108 agtgtcccgagg-cactcgttaacacaacc 136  Q
    |||| ||| ||| |||||||||||| ||||    
T  18926325 agtg-ccctaggacactcgttaacaaaacc 18926297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 6392237 - 6392177
Alignment:
Q  50 ggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagt 110  Q
    |||||||||||||||| |  |||  ||||||||| |||||||||||| |||||||||||||    
T  6392237 ggaaattgaaaacttttaagttttgaaagaataatttcttaatttagaatgcttaaagagt 6392177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 27338321 - 27338257
Alignment:
Q  47 attggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    |||||||||||||   |||||| ||| |||||||||| ||  |||||||||||||||||||||||    
T  27338321 attggaaattgaactgtttgatttttttaaagaataattttctaatttagcatgcttaaagagtg 27338257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 23682460 - 23682561
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||| ||||||||||||| ||||||||| | |||| || |||| ||||| |||||||||| |||| |||| ||||| |  ||||||||| ||| |||||    
T  23682460 ttaaagggtaactttttataaaagtttgtcttatcattg-attgaaaattaaaaactttgacattt-taaaaaataattatttaatttagaatgtttaaa 23682557  T
Q  107 gagt 110  Q
    ||||    
T  23682558 gagt 23682561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 35599817 - 35599934
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcc 114  Q
    |||||||||||||||  || | || ||| ||||||| || |||||   |||||  ||| |||||||||| ||| |||||||| ||| ||||||||| ||     
T  35599817 taactttttatgaaaagttatgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttagtatgtttaaagagtatct 35599916  T
Q  115 cg-aggcactcgttaaca 131  Q
    || |||||||||||||||    
T  35599917 cggaggcactcgttaaca 35599934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 47507709 - 47507584
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||||||||||| | ||||||   ||| |||||| | ||| ||||||||||| ||||||| ||| || | ||| | |||||  ||||| || ||||||    
T  47507709 ttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatccttaaa 47507610  T
Q  107 gagtgtccc-gaggcactcgttaaca 131  Q
    ||||| ||| ||| ||||||||||||    
T  47507609 gagtgccccggagacactcgttaaca 47507584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 3683523 - 3683393
Alignment:
Q  5 tcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||||| ||||||||||||||||  || | || ||| |||| |||||||||||   ||||| |||| | |||||||  ||| |||||||  |||||||    
T  3683523 tcttaaatagtaactttttatgaaaagttatgtattcaatgca-tggaaattgaactatttgaaattt-tcaagaatattttcctaatttattatgctta 3683426  T
Q  105 aagagtgt-cccgaggcactcgttaacacaacc 136  Q
    |||||||| || | |||||||||||||| ||||    
T  3683425 aagagtgtgccgggggcactcgttaacaaaacc 3683393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 25036971 - 25037071
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataat-cagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||| |||||||| |||||||||||||  |||  ||||||||| ||||| |||| |||||  ||| |||| ||||| | |||||||||  ||||||||    
T  25036971 ttaaattgtaactttctatgaaagtttgtgcaataaagtgcattgaaaattaaaaattttgacctttttaaataataattacttaatttaaaatgcttaa 25037070  T
Q  106 a 106  Q
    |    
T  25037071 a 25037071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 48947303 - 48947173
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||| ||||| | |||||||||| |||||||||    
T  48947303 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataattacttaatttagtatgcttaaa 48947204  T
Q  107 gagtgtccc-gaggcactcgttaacacaacc 136  Q
    || || ||| | |||||||||||||| ||||    
T  48947203 gaatgccccaggggcactcgttaacaaaacc 48947173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 39973991 - 39973866
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||  ||||||||| | ||||||||||||||||||||    
T  39973991 ttaaatgataactttttatgaaagtttgtataatcaatgcattgaaaattgaaaactttaacattttaaaagaataattacttaatttagcatgcttaaa 39973892  T
Q  107 gagtgtccc-gaggcactcgttaaca 131  Q
    ||||| ||| ||| ||||||||||||    
T  39973891 gagtgccccggagacactcgttaaca 39973866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 42573778 - 42573918
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||||||||| || | ||||  ||||||||| | ||||||||||||||||||||||    
T  42573778 aaatggtaactttttattgaagtttgtataatcagtgcattgaaaattgaaaaccttaacattttaaaagaataattacttaatttagcatgcttaaaga 42573877  T
Q  109 gtgtccc-gaggcactcgttaacacaacctttaaaatataa 148  Q
    ||| ||| |||||||| ||||||| |||||| || ||||||    
T  42573878 gtgccccggaggcacttgttaacaaaaccttaaagatataa 42573918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 16114021 - 16113893
Alignment:
Q  6 cttaaatggtaacttttt--atgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctt 103  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| ||||  ||| ||||| | |||||| ||| ||||||    
T  16114021 cttaaatggtaactttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttgacattttgaaaaaataattacttaatatagtatgctt 16113922  T
Q  104 aaagagtgtccc-gaggcactcgttaaca 131  Q
    |||||||| ||| ||||||||||||||||    
T  16113921 aaagagtgccccggaggcactcgttaaca 16113893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 35259053 - 35259178
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||||||||||||||  || || ||| ||||||| ||||||||||||||||||||| | |||| |||| ||||| ||||||||||||||| ||||||    
T  35259053 ttaaatggtaactttttacaaatgtgtgtgtaatcagcgcattggaaattgaaaacttttacatttttaaaaaataatttcttaatttagcatacttaaa 35259152  T
Q  107 gagtgtcccga-ggcactcgttaaca 131  Q
    ||||| ||||| ||||||||||||||    
T  35259153 gagtgccccgagggcactcgttaaca 35259178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 3047968 - 3047857
Alignment:
Q  5 tcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||||| |||| ||||||||||||||||| |||||| |||||||||||| ||||| ||||| |||| ||||||| || | ||||||||||||||||||    
T  3047968 tcttaaatagtaattttttatgaaagtttgtttaatcaatgcattggaaatcgaaaaatttgacatttttaaagaacaattacttaatttagcatgctta 3047869  T
Q  105 aagagtgtcccg 116  Q
    ||||||| ||||    
T  3047868 aagagtgccccg 3047857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 33791746 - 33791849
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||| ||||  ||||||||| | ||||||||||||| ||||||    
T  33791746 ttaaatagtaactttttatgaaagtttgtgtaatcggtgtattggaaattgaaaaatttgacattttaaaagaataattacttaatttagcatacttaaa 33791845  T
Q  107 gagt 110  Q
    ||||    
T  33791846 gagt 33791849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 35543409 - 35543550
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||||||||||| ||  ||||||||| |||| | |  ||||||||||||||||||||||||||  ||| ||||| | |||||||||||||||||||    
T  35543409 cttaaatggtaactttgtacaaaagtttgtgtaattaatatattggaaattgaaaactttgatattttaaaaaaataattacttaatttagcatgcttaa 35543508  T
Q  106 agagtg-tcccgaggcactcgttaacacaacctttaaaatat 146  Q
    | |||| |||  |||||||||||||||  ||||||| |||||    
T  35543509 atagtgctccaaaggcactcgttaacaagacctttacaatat 35543550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 40286957 - 40286850
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||   ||||  |||||||||   ||| ||||||||||||||||    
T  40286957 ttaaatagtaactttttataaaagtttgtgtactcagtgcattggaaattgaaaactttttaattttgaaagaataatgactttatttagcatgcttaaa 40286858  T
Q  107 gagtgtcc 114  Q
    ||||||||    
T  40286857 gagtgtcc 40286850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 48900 - 49000
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    |||| ||||||||||||||||| ||||| |||||||| |||||||||||||| | |||| | |||||||| | |||||||||||||| |||| |||||||    
T  48900 gtaaatttttatgaaagtttgtgtaatcggtgcattgaaaattgaaaacttttacatttttcaagaataattacttaatttagcatgattaacgagtgtc 48999  T
Q  114 c 114  Q
    |    
T  49000 c 49000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 49478913 - 49478786
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaac-tttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    ||||||||||||||||| ||  |||||||| |||||||||||||||||||||||||| ||||| ||||| ||| ||||| | ||||| | | ||||||||    
T  49478913 cttaaatggtaacttttcatagaagtttgtgtaatcagtgcattggaaattgaaaacttttgacatttaaaaaaaataattacttaactcaacatgctta 49478814  T
Q  105 aagagt-gtcccgaggcactcgttaaca 131  Q
    ||||||  ||| ||| ||||||||||||    
T  49478813 aagagtactccagagacactcgttaaca 49478786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 31043085 - 31042999
Alignment:
Q  22 ttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||| |||| |||| ||||| | |||||||||| |||||||||||    
T  31043085 ttatgaaagtttgtgtaatcaatgcattgaaaattgaaaactttgacatttttaaaaaataattacttaatttagaatgcttaaaga 31042999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 40053398 - 40053288
Alignment:
Q  1 atgatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatg 100  Q
    |||| ||||||| |||||||||||||||||||||| |||| | || |||| |||||||||||||||| |||| ||||||| || | | |||||||| |||    
T  40053398 atgaccttaaatagtaactttttatgaaagtttgtgtaataaatgtattgaaaattgaaaactttgacatttttaaagaacaattacctaatttagaatg 40053299  T
Q  101 cttaaagagtg 111  Q
    |||||| ||||    
T  40053298 cttaaaaagtg 40053288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 34861232 - 34861344
Alignment:
Q  20 ttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg-tcccgag 118  Q
    |||||||||| || ||  |||||||| ||||||||||||||  ||||| |||| |||| ||||| | |||||||||| ||||||||||||||  |||| |    
T  34861232 ttttatgaaatttagtgaaatcagtgtattggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtgcccccggg 34861331  T
Q  119 gcactcgttaaca 131  Q
    |||||||||||||    
T  34861332 gcactcgttaaca 34861344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 290682 - 290601
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttag 96  Q
    |||||||| ||  |||||||| |||||||||||||| |||||||||||||||| ||||  ||||||||| | ||||||||||    
T  290682 taacttttcattgaagtttgtgtaatcagtgcattgtaaattgaaaactttgacattttaaaagaataattacttaatttag 290601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 10355034 - 10355139
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||||||| |||||||| ||||||||  |||| ||  ||||||||||||||| || ||||||| |||| ||||| | ||| |||||| || ||||||    
T  10355034 ttaaatggtaattttttatggaagtttgtgaaatcggtatattggaaattgaaaatttagatatttttaaaaaataattactttatttagaatacttaaa 10355133  T
Q  107 gagtgt 112  Q
    ||||||    
T  10355134 gagtgt 10355139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 290863 - 290963
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    ||||| |||||| ||||| ||| || |||| |||||||||||| |||||||| | ||||  ||||||||| | ||  |||||||||||||||||||||||    
T  290863 gtaaccttttataaaagtatgtgtagtcagcgcattggaaattaaaaacttttaaattttgaaagaataattactctatttagcatgcttaaagagtgtc 290962  T
Q  114 c 114  Q
    |    
T  290963 c 290963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 31807800 - 31807912
Alignment:
Q  21 tttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg-tcccgag 118  Q
    ||||||||||||||| |||| | |||||||| |||||||||||| | | |||| |||||||||| | |||| ||||| ||||||||| |||| ||| | |    
T  31807800 tttatgaaagtttgtgtaataaagtgcattgaaaattgaaaactatcacatttttaaagaataattacttattttagaatgcttaaatagtgctccgggg 31807899  T
Q  119 gcactcgttaaca 131  Q
    |||||||||||||    
T  31807900 gcactcgttaaca 31807912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 38172744 - 38172668
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataa 83  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||  ||||| |||||||| | |||| ||||||||||    
T  38172744 ttaaatgataactttttataaaagtttgtgtaatcagtgcattaaaaattaaaaacttttacatttttaaagaataa 38172668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 39912284 - 39912342
Alignment:
Q  74 taaagaataacttcttaatttagcatgcttaaagagtgtccc-gaggcactcgttaaca 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  39912284 taaataataacttcctaatttagcatgcttaaagagtgtcccgggggcactcgttaaca 39912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 24034156 - 24034055
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| ||||  |||||| | ||||||| ||||||||||||| ||||||||||||||| | ||||  ||||||||| | ||  |||||| |||||||||    
T  24034156 ttaaatagtaaacttttataagagtttgtgtaatcagtgcattagaaattgaaaacttttaaattttgaaagaataattactctatttagtatgcttaaa 24034057  T
Q  107 ga 108  Q
    ||    
T  24034056 ga 24034055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 30548373 - 30548313
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttg 66  Q
    ||||||||||||  ||||||||||||| || ||||||||| ||||||||||||||| ||||    
T  30548373 cttaaatggtaaacttttatgaaagttagtgtaatcagtgtattggaaattgaaaagtttg 30548313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 4040992 - 4040889
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||| ||||||||| ||||||||||| |||| |||  |||| |||||||||||||||| | || ||   ||||| | |||||||||  |||||||||    
T  4040992 ttaaatgataactttttgtgaaagtttgtgtaataagtatattgaaaattgaaaactttgacacttttatgtaataattacttaatttaaaatgcttaaa 4040893  T
Q  107 gagt 110  Q
    ||||    
T  4040892 gagt 4040889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 4521045 - 4521138
Alignment:
Q  37 taatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgaggcactcgttaaca 131  Q
    |||||| |||||||||||||||||  ||| |  ||| ||||||||||   |||  ||||| |||||||||||||| |||||||||||||||||||    
T  4521045 taatcaatgcattggaaattgaaatgtttaacttttttaaagaataatcgcttgttttagtatgcttaaagagtg-cccgaggcactcgttaaca 4521138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 9931874 - 9931809
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatattt 72  Q
    ||||||||||| ||||||| ||||||||| |||| | || |||| |||||||||||||||| ||||    
T  9931874 ttaaatggtaattttttataaaagtttgtgtaattaatgtattgaaaattgaaaactttgacattt 9931809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 34596127 - 34596249
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||| ||||||||||||||| | ||| |||||| ||||||| |||| ||||  |||||  |||||||  ||||| |||||  ||||| || |||||     
T  34596127 ttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaatcgaaatatttgaattttataa--aataatttcttcttttagaatccttaat 34596224  T
Q  107 gagtgtcccgaggcactcgttaaca 131  Q
    || ||||| ||||||| ||||||||    
T  34596225 gaatgtccggaggcacccgttaaca 34596249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 51904575 - 51904664
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaattta 95  Q
    ||||||| | || ||||||||||||||||| || |  | ||||||||||||||||||||| | ||||  ||||||||| | |||||||||    
T  51904575 cttaaattgcaattttttatgaaagtttgtgtagttggggcattggaaattgaaaactttaacattttaaaagaataattacttaattta 51904664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 5250975 - 5251031
Alignment:
Q  74 taaagaataacttcttaatttagcatgcttaaagagtg-tcccgaggcactcgttaa 129  Q
    |||||||||||||| |||||||| ||| |||||||||| ||| ||||||||||||||    
T  5250975 taaagaataacttcctaatttagtatgtttaaagagtgctccggaggcactcgttaa 5251031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 46592543 - 46592579
Alignment:
Q  74 taaagaataacttcttaatttagcatgcttaaagagt 110  Q
    |||||||||||||| ||||||||||||||||||||||    
T  46592543 taaagaataacttcctaatttagcatgcttaaagagt 46592579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 6170982 - 6171025
Alignment:
Q  98 atgcttaaagagtgtcccgaggcactcgttaacacaacctttaa 141  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||    
T  6170982 atgcttaaagagtatcccgaggcactcattaacaaaacctttaa 6171025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 40341702 - 40341575
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgata-tttataaagaataacttcttaatttagcatgctta 104  Q
    ||||||| ||||  ||||||||||||| || ||||  |||||||| |||||||||| ||||||| ||| |  | || || | |||||||||| || ||||    
T  40341702 cttaaatcgtaaacttttatgaaagttagtgtaattggtgcattgaaaattgaaaagtttgatattttttttaaaaaaattacttaatttagaatactta 40341603  T
Q  105 aagagtgtcccga-ggcactcgttaaca 131  Q
    ||||||||| ||| |||| |||||||||    
T  40341602 aagagtgtctcgagggcaatcgttaaca 40341575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 37976860 - 37976806
Alignment:
Q  74 taaagaataacttcttaatttagcatgcttaaagagtgtcccgaggcactcgtta 128  Q
    ||||| |||| || ||| ||||| ||||||||||||||||||| |||||||||||    
T  37976860 taaagtataattttttattttagaatgcttaaagagtgtcccggggcactcgtta 37976806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 40203085 - 40203138
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaa 60  Q
    ||||||||||||||| | ||||| | ||| |||||| |||||||||||||||||    
T  40203085 ttaaatggtaactttgtctgaaaatatgtgtaatcaatgcattggaaattgaaa 40203138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 27934747 - 27934839
Alignment:
Q  19 tttttatgaaagtttgtataatcagt-gcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagt 110  Q
    ||||||| ||||||||| |||| | | | |||| |||||||||  |||||||||| |||| ||||| |  ||||||||| |||||||||||||    
T  27934747 tttttataaaagtttgtgtaataaattgtattgaaaattgaaacttttgatatttttaaataataattatttaatttagaatgcttaaagagt 27934839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 30350925 - 30350978
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaa 61  Q
    ||||||||||||||||  ||||||||| || |||||| ||||||| ||||||||||    
T  30350925 cttaaatggtaacttt--atgaaagttagtgtaatcaatgcattgaaaattgaaaa 30350978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 53261657 - 53261532
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||| | |||| |||||||||| | ||||||||||||||||||||    
T  53261657 ttaaatagtaactttttataaaagtttgtgtaatcactgcattggaaattgaaaacttttaaatttttaaagaataattacttaatttagcatgcttaaa 53261558  T
Q  107 gagtgtcc-cgaggcactcgttaaca 131  Q
    ||||||||  | ||||||||||||||    
T  53261557 gagtgtcctgggggcactcgttaaca 53261532  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 52650695 - 52650822
Alignment:
Q  5 tcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||||| |||| |||||||||||  |||| ||||||||| |||| |||||||||| ||||| |||| |||||||||| |||||||||||||||| |||    
T  52650695 tcttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgttta 52650794  T
Q  105 aagagtg-tcccgaggcactcgttaaca 131  Q
    ||||||| ||| ||||||||||||||||    
T  52650795 aagagtgttccggaggcactcgttaaca 52650822  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 36876062 - 36876188
Alignment:
Q  5 tcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||| |||||||||||||| ||||||||| |||||| || |||||||||||||||| || | ||||  ||||||||  | ||||||||||||||||||    
T  36876062 tcttaagtggtaactttttataaaagtttgtgtaatcaatgtattggaaattgaaaacatttacattttaaaagaatagttacttaatttagcatgctta 36876161  T
Q  105 aagagtgtcccgaggcactcgttaaca 131  Q
    |||| | ||| |  |||||||||||||    
T  36876162 aagaatatccgggagcactcgttaaca 36876188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 2063567 - 2063450
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    |||||||||||||||| ||||| || | | | ||||||||||||||   |||||  ||| |||||||||||||| |||||||||||||||||||||||||    
T  2063567 gtaactttttatgaaaatttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgtc 2063468  T
Q  114 ccgaggcactcgttaaca 131  Q
    | |  |||||||||||||    
T  2063467 cgggagcactcgttaaca 2063450  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 21687592 - 21687717
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||||||||||||||| ||||||||| |||| | |||||||| |||||||| |||||||||||  |||||||  | | ||||| |||| | ||||||    
T  21687592 ttaaatggtaactttttataaaagtttgtgtaataaagtgcattgaaaattgaacactttgatattattaaagaaatattacttaacttagaaagcttaa 21687691  T
Q  106 agagtgtcccgaggcactcgttaaca 131  Q
    |||||| || | ||||||||||||||    
T  21687692 agagtgcccaggggcactcgttaaca 21687717  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 45743416 - 45743315
Alignment:
Q  5 tcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||||| |||||| |||||||||  |||| |||||| || |||| |||||||||||||||| |||| |||||||||| ||||||||||| ||| ||||    
T  45743416 tcttaaatagtaactctttatgaaaagttgtgtaatcactgtattgaaaattgaaaactttgacatttttaaagaataatttcttaatttaacatactta 45743317  T
Q  105 aa 106  Q
    ||    
T  45743316 aa 45743315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 49951721 - 49951822
Alignment:
Q  31 tttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccga-ggcactcgttaa 129  Q
    ||||| ||||| |||||||| |||||||||||||||| ||||  ||||||||| | ||||||||||||||||||||||||  ||||| |||||| |||||    
T  49951721 tttgtgtaatcggtgcattgaaaattgaaaactttgacattttaaaagaataattacttaatttagcatgcttaaagagtaccccgagggcactagttaa 49951820  T
Q  130 ca 131  Q
    ||    
T  49951821 ca 49951822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 17970907 - 17970800
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaa-ctttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||||||||||| || ||||||    ||||||||||||||||||||||||| |||||||||||  || |||||| | ||||||||| |||||||||    
T  17970907 ttaaatggtaacttttcattaaagttg---taatcagtgcattggaaattgaaaaactttgatattttaaatgaataattacttaatttatcatgcttaa 17970811  T
Q  106 agagtgtcccg 116  Q
    |||||| ||||    
T  17970810 agagtgccccg 17970800  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 21241191 - 21241102
Alignment:
Q  42 agtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgaggcactcgttaaca 131  Q
    |||||||||||||||||||| |||||||||| |||| ||| | ||||||||||| |||| |||||||||| || | ||| ||||||||||    
T  21241191 agtgcattggaaattgaaaattttgatatttttaaaaaatcatttcttaatttaacatgtttaaagagtgccctggggcgctcgttaaca 21241102  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 25042743 - 25042837
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaag 107  Q
    ||||| ||||||||||| ||||||||| |||||||| |||| ||||||||||| ||| | |||| |||||||||    |||||||||||||||||||||    
T  25042743 aaatgttaactttttataaaagtttgtgtaatcagtacattagaaattgaaaattttaacatttttaaagaata----cttaatttagcatgcttaaag 25042837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 31263015 - 31262892
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||||  |||||||||| ||||||||| || ||||| ||||  |||| ||||||||||| |||| |||| ||||| | |||||||||| ||||||||    
T  31263015 cttaaatgacaactttttataaaagtttgtgtagtcagtacattcaaaatcgaaaactttgacatttttaaa-aataattacttaatttagaatgcttaa 31262917  T
Q  106 agagtgtcccgaggcactcgttaaca 131  Q
    |||||| |  ||||||||||||||||    
T  31262916 agagtg-caggaggcactcgttaaca 31262892  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 47937966 - 47937859
Alignment:
Q  3 gatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgct 102  Q
    ||||||||||| ||| |||||||||||||||||  || ||| |||| | ||||||||||||||||  ||| |||||||||| | | |||||||| ||| |    
T  47937966 gatcttaaatgataattttttatgaaagtttgtgcaaacagagcatagaaaattgaaaactttgacttttttaaagaataattacataatttagtatgtt 47937867  T
Q  103 taaagagt 110  Q
    ||||||||    
T  47937866 taaagagt 47937859  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 49795231 - 49795119
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccga- 117  Q
    ||||||| ||||||||| ||||| |||||||| |||||||||| ||| | ||||| ||| ||||| | ||| |||||| |||||||||||||| ||| |     
T  49795231 tttttataaaagtttgtgtaatcggtgcattgaaaattgaaaatttttaaatttaaaaa-aataattactttatttagtatgcttaaagagtgcccccag 49795133  T
Q  118 ggcactcgttaaca 131  Q
    ||||||||||||||    
T  49795132 ggcactcgttaaca 49795119  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 20022290 - 20022234
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaac 62  Q
    ||||||| |||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  20022290 cttaaatagtaattttttatgaaagtttgtacaatcaatgcattggaaattgaaaac 20022234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 37461492 - 37461583
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    ||||||||||||||||| ||||| |||||||  |||||||||||||||| |||| ||||   ||| | |||||||||||||| ||||||||||    
T  37461492 tttttatgaaagtttgtgtaatcggtgcattaaaaattgaaaactttgacattt-taaaatttaattacttaatttagcatgtttaaagagtg 37461583  T

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Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 49532295 - 49532382
Alignment:
Q  44 tgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtccc-gaggcactcgttaaca 131  Q
    ||||||||||||||||   |||||| |||||||||||||| |||||||||| | ||||||| |||||||||| | ||||||||||||||    
T  49532295 tgcattggaaattgaattatttgat-tttataaagaataatttcttaatttggaatgcttacagagtgtcccgggggcactcgttaaca 49532382  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 40252754 - 40252645
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| |||| |||||||||||||| || |||||| || |||| |||||||||||||| | |||| |||| || || | |||||||||  ||| |||||    
T  40252754 ttaaatagtaaatttttatgaaagtt-gtgtaatcaatgtattgaaaattgaaaactttaacatttttaaataacaattacttaatttaatatgtttaaa 40252656  T
Q  107 gagtgtcccga 117  Q
    |||||||||||    
T  40252655 gagtgtcccga 40252645  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 23136534 - 23136639
Alignment:
Q  27 aaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg-tcccgaggcactcg 125  Q
    |||| |||| ||||||||||||||||||||||||||||| | ||||  ||||||||| | |||||||||  || ||||| ||||| | | ||| ||||||    
T  23136534 aaagattgtgtaatcagtgcattggaaattgaaaacttttaaattttaaaagaataattacttaatttaatatacttaaggagtgcttcggagacactcg 23136633  T
Q  126 ttaaca 131  Q
    ||||||    
T  23136634 ttaaca 23136639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 27963121 - 27963197
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataa 83  Q
    ||||||| ||| |||||||| ||||||||||||| |||| |||| |||||||||| ||| ||||||  |||||||||    
T  27963121 ttaaatgataaatttttatggaagtttgtataattagtgtattgaaaattgaaaattttaatattttaaaagaataa 27963197  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 3179014 - 3179072
Alignment:
Q  8 taaatggtaactttttatgaaagtttgtataat-cagtgcattggaaattgaaaacttt 65  Q
    ||||| |||||||||||||||||||||| ||||  |||| |||||||||||||||||||    
T  3179014 taaatagtaactttttatgaaagtttgtgtaataaagtgtattggaaattgaaaacttt 3179072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 38354487 - 38354605
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttat-aaagaataacttcttaatttagcatgctta 104  Q
    ||||||||||||  |||||| |||||| || ||||||||| ||| ||||||||||| ||||| |||| | ||| ||||| | |||||||||  | | |||    
T  38354487 cttaaatggtaaacttttattaaagttagtgtaatcagtgtattagaaattgaaaagtttgacatttttaaaaaaataattacttaatttaaaaggttta 38354586  T
Q  105 aagagtgtcccgaggcact 123  Q
    |||||||| | ||||||||    
T  38354587 aagagtgttcagaggcact 38354605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 35153351 - 35153274
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataa 83  Q
    |||||| |||||||||||| |||||||||  ||| | |||||||| |||||||||||||| | |||| ||||||||||    
T  35153351 ttaaatagtaactttttataaaagtttgtgcaataaagtgcattgaaaattgaaaactttaacatttttaaagaataa 35153274  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 24369478 - 24369402
Alignment:
Q  35 tataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    |||||||||||| |||||||||||||  |||||  |||||||||||||| |  ||| ||||| ||| ||||||||||    
T  24369478 tataatcagtgctttggaaattgaaatgtttgacttttataaagaataattgtttattttagtatgtttaaagagtg 24369402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 27748526 - 27748415
Alignment:
Q  20 ttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgagg 119  Q
    ||||||||||||| || |||||  |  |||| |||||||||| ||  ||| || |||| ||||| | |||| ||||| ||| ||||||||||||||| |     
T  27748526 ttttatgaaagttagtgtaatcgatatattgaaaattgaaaagttaaatacttttaaaaaataattacttagtttagaatgtttaaagagtgtcccgtga 27748427  T
Q  120 cactcgttaaca 131  Q
    ||||||||||||    
T  27748426 cactcgttaaca 27748415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 51291183 - 51291060
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    |||||||||  ||||||||||||||||  | | | ||||||||||||||||  |||| ||  || |||||||||||||||| |||  | ||| |||||||    
T  51291183 aaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtctttaattattttaaagaataacttcttcattaggaatgtttaaaga 51291084  T
Q  109 gtgtcccga-ggcactcgttaaca 131  Q
    ||| | ||| |||| |||||||||    
T  51291083 gtgcctcgagggcattcgttaaca 51291060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 24546722 - 24546820
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgt 112  Q
    |||| ||||||||||| ||||| || | | | ||||||||||||||    ||||  ||| |||||||||| ||| ||||||| ||||||||||||||||    
T  24546722 gtaattttttatgaaaatttgtgtatttaatacattggaaattgaactgcttgaattttttaaagaataatttcctaatttaacatgcttaaagagtgt 24546820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 12618713 - 12618808
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaac-tttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcc 114  Q
    ||||||||||| |||||||||||| |||||| |||||| | ||| |||||  |||  ||| ||||| |||| ||||| | |||||||||||||||||    
T  12618713 tttttatgaaaatttgtataatcaatgcatt-gaaatttataacatttgactttttaaaaaaataatttctaaatttggaatgcttaaagagtgtcc 12618808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 50617596 - 50617492
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||| | | |||| ||||||||| ||  ||||||||||||  |||||||||| ||||| ||||  ||| ||||| | |||||||||  ||| ||||    
T  50617596 cttaaatgatcaattttgatgaaagttagtgcaatcagtgcattaaaaattgaaaagtttgacattttaaaaaaataattacttaatttataatgtttaa 50617497  T
Q  106 agagt 110  Q
    |||||    
T  50617496 agagt 50617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 4695164 - 4695065
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    |||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| || ||||||||||||||||||||||||||    
T  4695164 gtaattttttatggaagtttgtataatcagtgcattggaaattaaaaactttaatatttttaaagaataattttttaatttagcatgcttaaagagtgtc 4695065  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 14309106 - 14309195
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    ||||||||||| ||||| |||| | ||||||||||||||||||||||||||||| |||||||||||| |||||||||  |||||||||||    
T  14309106 tttttatgaaaatttgtgtaattaatgcattggaaattgaaaactttgatatttttaaagaataactacttaatttaatatgcttaaaga 14309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 16636669 - 16636740
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaa 77  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||||||| ||||    
T  16636669 cttaaatggtaactttttataaaagtttgtgtaattagtgcattgaaaattgacaactttgatatttttaaa 16636740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 21259424 - 21259523
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||| |||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| || | |||||||||| || |||||||| ||| |||||    
T  21259424 cttaaatgataactttttatggaagtttgtgtaatcagtgcattgaaaattaaaaattttgacatctttaaagaataattttttaatttaacattcttaa 21259523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 25437888 - 25438007
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttga-tatttataaagaataacttcttaatttagcatgcttaaagagtgt 112  Q
    ||||||||||||||||  |||| || | | | ||||||||||||||   ||| | | ||| |||||||||||||||||||||||||||||||||||||||    
T  25437888 gtaactttttatgaaaacttgtgtatttaatacattggaaattgaactgtttcactttttttaaagaataacttcttaatttagcatgcttaaagagtgt 25437987  T
Q  113 ccc-gaggcactcgttaaca 131  Q
    ||| | ||||||||||||||    
T  25437988 cccgggggcactcgttaaca 25438007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 38594938 - 38595037
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||| ||| ||||||||||| ||| |||||| | |||||||||||||||||| ||||| ||||  ||||||||| | ||||||||||||| ||||||    
T  38594938 ttaaatgataaatttttatgaaaatttatataattaatgcattggaaattgaaaattttgacattttaaaagaataattacttaatttagcatacttaaa 38595037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 10228417 - 10228315
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| |||||||||||  ||||||||| ||| |||||||| |||||||||||||||| | ||||  ||||||||| | ||| | ||||||||||||||    
T  10228417 ttaaatagtaactttttaaaaaagtttgtgtaaccagtgcatcggaaattgaaaacttttaaattttgaaagaataattacttta-ttagcatgcttaaa 10228319  T
Q  107 gagt 110  Q
    ||||    
T  10228318 gagt 10228315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 26432359 - 26432261
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaag 107  Q
    ||||||||| |||||||||||||| || |||||||| |||||||||||||||| |||  |||||  ||| ||||| | |||||||||  ||||||||||    
T  26432359 aaatggtaaatttttatgaaagttagtgtaatcagtacattggaaattgaaaagtttattattttaaaaaaataattacttaatttaaaatgcttaaag 26432261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 27794866 - 27794931
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatattt 72  Q
    ||||||||||| ||||||| ||||||||||||||||  ||||| ||||||||||| ||||||||||    
T  27794866 ttaaatggtaattttttataaaagtttgtataatcatcgcatttgaaattgaaaattttgatattt 27794931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 17774289 - 17774388
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| ||||||||||||||| ||||| |||| | ||| ||||||||||||||| |||||||||| |||||||||| | ||| |||||  ||||||||    
T  17774289 ttaaatgataactttttatgaaa-tttgtgtaataaagtgtattggaaattgaaaaatttgatatttttaaagaataattacttgatttaaaatgcttaa 17774387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 36609150 - 36609237
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||||| | |||||||| |  ||||||||| ||| |||||    
T  36609150 tttttataaaagtttgtgtaattagtacattgaaaattgaaaactttgatatttttgaagaataattatttaatttagaatgtttaaa 36609237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 12221523 - 12221433
Alignment:
Q  20 ttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagt 110  Q
    ||||| |||| ||| | |||||||| ||||| ||||| |||||||||| | || |||||||||||| |||||||||| ||| |||||||||    
T  12221523 ttttacgaaaatttatgtaatcagtacattgaaaattaaaaactttgacaattttaaagaataactacttaatttagtatgtttaaagagt 12221433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 22601875 - 22601786
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaattta 95  Q
    |||||||| ||| ||||||| ||| ||||||||||||||  |||| ||||| |||| |||||||||| |||| ||||| | |||||||||    
T  22601875 cttaaatgataaatttttataaaaatttgtataatcagtttattgaaaattaaaaattttgatatttttaaaaaataattacttaattta 22601786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 29829677 - 29829584
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgt 112  Q
    |||||||||| |||||||||||||||| |||||||| |||||| | ||| |||| |||| ||||| | | |||||||  ||| |||||||||||    
T  29829677 tttttatgaatgtttgtataatcagtgaattggaaactgaaaagtgtgacatttttaaaaaataattacataatttaaaatgtttaaagagtgt 29829584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 41568708 - 41568775
Alignment:
Q  41 cagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    |||||||||| |||||||||||||||| |||| | ||||||||   |||||||||| |||||||||||    
T  41568708 cagtgcattgaaaattgaaaactttgacatttttgaagaataataacttaatttagtatgcttaaaga 41568775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 26686667 - 26686752
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatg 100  Q
    ||||||||||||||||||||| |||||  || |||| ||||| |||||||| | |||| |||||||||  | ||||||||| ||||    
T  26686667 taactttttatgaaagtttgtgtaatcgatgtattgaaaattaaaaacttttacatttttaaagaatacttacttaatttaacatg 26686752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 26956398 - 26956483
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatg 100  Q
    ||||||||||||||||||||| |||||  || |||| ||||| |||||||| | |||| |||||||||  | ||||||||| ||||    
T  26956398 taactttttatgaaagtttgtgtaatcgatgtattgaaaattaaaaacttttacatttttaaagaatacttacttaatttaacatg 26956483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 10410550 - 10410424
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataat-cagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||| |||||||||||| |||||||||  |||  |||||||||||||||||| | | ||| |||| |||| ||  | | |||||||||| | | ||||    
T  10410550 ttaaattgtaactttttataaaagtttgttaaataaagtgcattggaaattgaatattctgacatttttaaaaaaatattacttaatttagaaagtttaa 10410451  T
Q  106 agagtgtccc-gaggcactcgttaaca 131  Q
    |||||| ||| | ||||||||||||||    
T  10410450 agagtgccccgggggcactcgttaaca 10410424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31672511 - 31672458
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaa 60  Q
    ||||| ||||||||||| ||||| ||| | |||||| |||||||||||||||||    
T  31672511 ttaaaaggtaactttttttgaaattttttgtaatcaatgcattggaaattgaaa 31672458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 39177749 - 39177677
Alignment:
Q  38 aatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    |||||||| ||||||||||||||||||| | ||||  |||| |||| | ||| ||||||||| |||||||||||    
T  39177749 aatcagtgtattggaaattgaaaacttttaaattttgaaaggataattactttatttagcat-cttaaagagtg 39177677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 10051829 - 10051781
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaat 55  Q
    |||||||||||||| ||||||||  ||||||||||| ||||| ||||||    
T  10051829 ttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaat 10051781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 26453647 - 26453723
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaata 82  Q
    ||||||||||||  |||||| ||| ||||| ||| ||| |||||| |||||||||| ||||| |||| |||| ||||    
T  26453647 cttaaatggtaaacttttataaaaatttgtgtaaccagcgcattgaaaattgaaaagtttgacatttttaaaaaata 26453723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 45758016 - 45757903
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg-tcccga 117  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||||||| | ||||||||| ||||||||||||||| ||| ||    
T  45758016 tttttatgaaagtttgtgtaatcagtgcattgtaaattgaaaactttgacatttttaaagaataattgcttaatttaacatgcttaaagagtgatccgga 45757917  T
Q  118 ggcactcgttaaca 131  Q
    | ||||||||||||    
T  45757916 gacactcgttaaca 45757903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 48551137 - 48551035
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    |||| |||||||||||| |||  |||| ||||| |||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||    
T  48551137 aaatagtaactttttataaaaaattgtgtaatcggtgcattgaaaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaaaga 48551038  T
Q  109 gtg 111  Q
    |||    
T  48551037 gtg 48551035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 3026991 - 3027117
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||| |||||||||||||||||||||| || | | |||||||||||| ||||| ||||||||||| |||| || || | |||||||||| ||||||||    
T  3026991 ttaaatagtaactttttatgaaagtttgtgtagtgaagtgcattggaaaatgaaacctttgatatttttaaataaaaattacttaatttagaatgcttaa 3027090  T
Q  106 agagtg-tcccgaggcactcgttaaca 131  Q
    |||||| ||| ||||||||||||||||    
T  3027091 agagtgctccggaggcactcgttaaca 3027117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 25317905 - 25317779
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| |||| ||||||| ||||||||| |||||  |||||||||||||||||||||| | ||||  ||||||||| | ||| ||||||||||||| |    
T  25317905 cttaaatagtaaatttttataaaagtttgtgtaatcgatgcattggaaattgaaaacttttaaattttaaaagaataattactttatttagcatgcttga 25317806  T
Q  106 agagtgtccc-gaggcactcgttaaca 131  Q
    |||||||||| ||||| ||||||||||    
T  25317805 agagtgtcccggaggcgctcgttaaca 25317779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 12140246 - 12140145
Alignment:
Q  6 cttaaatggtaactttttatgaaa-gtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    ||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||  ||||||||| |  |||||||||||||||||    
T  12140246 cttaaatagtaactttttataaaaagtttgtataatcagtacattggaaattgaaaactttgacattttaaaagaataattatttaatttagcatgctta 12140147  T
Q  105 aa 106  Q
    ||    
T  12140146 aa 12140145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 14146199 - 14146107
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcat 99  Q
    ||||||||||| |||||||  |||||||| ||||||||||||| ||||||||||||||||| ||||| ||| ||||| | |||||||||||||    
T  14146199 ttaaatggtaaatttttatagaagtttgtgtaatcagtgcattagaaattgaaaactttgacatttaaaaaaaataattacttaatttagcat 14146107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 24313651 - 24313525
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcag-tgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| ||||||||||||||| ||||| || | |  ||||||| |||||||||||||||| |||| |||||||||| |  ||||||||| ||| ||||    
T  24313651 ttaaatgataactttttatgaaaatttgtgtagtaaaatgcattgaaaattgaaaactttgacatttttaaagaataattgtttaatttagaatgtttaa 24313552  T
Q  106 agagtgtcccgagg-cactcgttaaca 131  Q
    |||||| ||||||| ||||||||||||    
T  24313551 agagtgccccgaggacactcgttaaca 24313525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 20821403 - 20821303
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataat-cagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||| |||| |||||| |||||||||| | |||| ||||| ||| ||||    
T  20821403 ttaaatggtaactttttatgaaagtttgtgtaataaagtgcattggaaattaaaacctttaatatttttaaagaataattacttagtttagaatgtttaa 20821304  T
Q  106 a 106  Q
    |    
T  20821303 a 20821303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 29612106 - 29611994
Alignment:
Q  21 tttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtccc-gag 118  Q
    ||||||||||||||| |||| | ||||||||||||||||||||| | | |||| |||||||||| | |||| ||||| ||| |||||||||||||| | |    
T  29612106 tttatgaaagtttgtgtaataaagtgcattggaaattgaaaactgtcacatttttaaagaataattacttattttagaatgtttaaagagtgtcccgggg 29612007  T
Q  119 gcactcgttaaca 131  Q
    |||||||||||||    
T  29612006 gcactcgttaaca 29611994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 53040558 - 53040457
Alignment:
Q  17 actttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccg 116  Q
    ||||||||||||||||||| || ||| | ||||||||||||||   |||||  ||| |||| ||||| |||||||||||| || ||||||||||||| ||    
T  53040558 actttttatgaaagtttgtgtattcaatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttaaagagtgtcacg 53040459  T
Q  117 ag 118  Q
    ||    
T  53040458 ag 53040457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 16678978 - 16678887
Alignment:
Q  52 aaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgaggcactcgttaacacaacctttaaaa 143  Q
    |||||||||||||| ||||||  ||||||||| | ||| ||||||  || |||||||||||||  ||||||||||||||| |||||| ||||    
T  16678978 aaattgaaaacttttatattttaaaagaataattactttatttagagtgtttaaagagtgtccgaaggcactcgttaacaaaaccttaaaaa 16678887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 22772952 - 22772851
Alignment:
Q  15 taactttttatgaaagtttgtataatcagt-gcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    ||||||||| |||||||||||| ||| | | ||||||||||||||||||||||| |||  ||  |||||| | |||||||| | ||| ||||||||||||    
T  22772952 taactttttgtgaaagtttgtagaataaattgcattggaaattgaaaactttgaaattgttatggaataattacttaatttggaatgtttaaagagtgtc 22772853  T
Q  114 cc 115  Q
    ||    
T  22772852 cc 22772851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 37388494 - 37388381
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtccc-ga 117  Q
    ||||||| ||| ||||| |||||| ||||||| ||| |||||| ||| | |||| |||||||||| | ||||||||| |||  ||||||||| | || ||    
T  37388494 tttttataaaaatttgtgtaatcaatgcattgaaaactgaaaaatttcacatttttaaagaataattacttaatttaacatatttaaagagtattccaga 37388395  T
Q  118 ggcactcgttaaca 131  Q
    ||||||||||||||    
T  37388394 ggcactcgttaaca 37388381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 45584343 - 45584432
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||||||||||||||||| |||||| |  |||| ||||| |||||||  ||||||  ||||||||| | ||||||||| ||||||||||    
T  45584343 taactttttatgaaagtttgtgtaatcaatatattgaaaattaaaaactt--atattttaaaagaataattacttaatttaacatgcttaaa 45584432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 46725721 - 46725633
Alignment:
Q  42 agtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgagg-cactcgttaa 129  Q
    ||||||||| |||||||||| ||| | |||| || | ||||||| |||||||||| ||||||||||||| ||||| || ||||||||||    
T  46725721 agtgcattgaaaattgaaaattttaacatttttataaaataactacttaatttagaatgcttaaagagtatcccgtggacactcgttaa 46725633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 1511434 - 1511324
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttat-aaagaataacttcttaatttagcatgcttaa 105  Q
    ||||| ||||||||||| ||||| ||  | |||||| ||||||||||||||||| |||||| |||| | |  |||||| |||||  ||| ||||||||||    
T  1511434 ttaaaaggtaactttttttgaaaattaatgtaatcaatgcattggaaattgaaatctttgacatttttgatggaataatttcttcttttggcatgcttaa 1511335  T
Q  106 agagtgtcccg 116  Q
    |||||| ||||    
T  1511334 agagtgccccg 1511324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 33072120 - 33072178
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttga 67  Q
    ||||||||| ||||||| ||| ||||| |||| | ||||||||||||||||||||||||    
T  33072120 aaatggtaattttttataaaaatttgtgtaattaatgcattggaaattgaaaactttga 33072178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 54290823 - 54290893
Alignment:
Q  46 cattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccg 116  Q
    ||||||||||||||   |||||  ||| |||||||||||||| ||||||| ||||||||||||||| ||||    
T  54290823 cattggaaattgaactgtttgacttttttaaagaataacttcctaatttatcatgcttaaagagtgccccg 54290893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 54911293 - 54911199
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    |||||||||||||||||||| | |||||| || |||| ||||| |||||||| | ||||  ||||||||| |  ||||||||| ||| |||||||    
T  54911293 gtaactttttatgaaagtttatgtaatcaatgtattgaaaatttaaaactttaacattttaaaagaataattatttaatttagaatgtttaaaga 54911199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 28691951 - 28692037
Alignment:
Q  27 aaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    ||||||||| |||| | || ||| ||||||||||||||| | ||||  ||||||||| | |||||||||  ||| ||||||||||||    
T  28691951 aaagtttgtgtaattattgtattagaaattgaaaactttaacattttaaaagaataattacttaatttaatatgtttaaagagtgtc 28692037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 43804061 - 43803944
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    ||||||||||||||||  |||| || | | | ||||||||||||||   |||||  ||| |||||||||||||   |||||| ||||||||||||||  |    
T  43804061 gtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataactttccaatttatcatgcttaaagagt-ac 43803963  T
Q  114 ccgagg-cactcgttaaca 131  Q
    |||||| ||||||||||||    
T  43803962 ccgaggacactcgttaaca 43803944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 30082889 - 30082821
Alignment:
Q  74 taaagaataacttcttaatttagcatgcttaaagagtgtcccgag-gcactcgttaacacaacctttaa 141  Q
    |||||||||||| |||| ||||| |||||||||||||| ||  || | ||||||||||| |||||||||    
T  30082889 taaagaataactgcttattttagaatgcttaaagagtgcccaaagcggactcgttaacaaaacctttaa 30082821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 6334679 - 6334804
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    ||||||| ||||||||||  ||||||| |||||||| |||||||||||||||||||||||| |||| |||| ||||| || ||||||||||||| |||||    
T  6334679 ttaaatgataactttttacaaaagtttatataatcaatgcattggaaattgaaaactttgacatttttaaaaaataattttttaatttagcatgtttaaa 6334778  T
Q  107 gagtgtcccgagg-cactcgttaaca 131  Q
    |||||| |||||| ||||||||||||    
T  6334779 gagtgttccgaggacactcgttaaca 6334804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 24389632 - 24389739
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| || |  ||||||||| | ||||||||||||||||||||||    
T  24389632 aaatggtaacttcttatgaaagtttgtgtaatcagcgcattggaaattgaaaactttgacatcttaaaagaataattacttaatttagcatgcttaaaga 24389731  T
Q  109 gtgtcccg 116  Q
    ||| ||||    
T  24389732 gtgccccg 24389739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 565706 - 565825
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataactt--cttaatttagcatgcttaaagagtg 111  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||||||||| | |||| |||||||||  ||  ||||||||||||||||||||||||     
T  565706 gtaactttttatgaaagtttgtgtaattagtgcataggaaattgaaaactttcacatttttaaagaatacttttacttaatttagcatgcttaaagagta 565805  T
Q  112 tcccgaggcactcgttaaca 131  Q
    || || | ||||||||||||    
T  565806 tctcgggacactcgttaaca 565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 33455068 - 33454964
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| ||||||||||||||||  |||| |||||| || |||| |||||||||||||||| |||| |||||||||  |||||||||||||||||||||    
T  33455068 cttaaatagtaactttttatgaaaagttgtgtaatcaatgtattgtaaattgaaaactttgacatttttaaagaatagtttcttaatttagcatgcttaa 33454969  T
Q  106 agagt 110  Q
    |||||    
T  33454968 agagt 33454964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 33068557 - 33068642
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcat 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||| ||||| | |||||||||||||    
T  33068557 gtaactttttatgaaagtttgtataatcagtgcattagaaattgaaaactttcacatttttaaaaaataattacttaatttagcat 33068642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 12848478 - 12848588
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||||  |||||||||||||||||||| |||| |||||| ||||||||||||||||||| |||  |||||||||  | |||||||||  ||||||||    
T  12848478 cttaaatgacaactttttatgaaagtttgtgtaattagtgcaatggaaattgaaaactttgacattattaaagaatagttacttaatttaatatgcttaa 12848577  T
Q  106 agagtgtcccg 116  Q
    |||||| ||||    
T  12848578 agagtgccccg 12848588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 6083911 - 6084013
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaaga 108  Q
    ||||| ||||||||||| ||||||||| |||||||  ||||| |||||||||||||||||||||  ||| ||||| | || ||||||| |||||||||||    
T  6083911 aaatgataactttttataaaagtttgtgtaatcagcacattgaaaattgaaaactttgatattttaaaataataattactaaatttagtatgcttaaaga 6084010  T
Q  109 gtg 111  Q
    |||    
T  6084011 gtg 6084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 3074177 - 3074070
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaa-ctttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||||||||||| || ||||||    ||||||||||||||||||||||||| |||||||||||  || |||||| | ||||||||| |||||||||    
T  3074177 ttaaatggtaacttttcattaaagttg---taatcagtgcattggaaattgaaaaactttgatattttaaatgaataattacttaatttatcatgcttaa 3074081  T
Q  106 agagtgtcccg 116  Q
    |||||| ||||    
T  3074080 agagtgccccg 3074070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 431640 - 431766
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtat-aatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||||||||||||||||||||||||| | ||  |||||||||||||||||||| ||| | |||| |||||||||| | |||||| ||| ||  ||||    
T  431640 ttaaatggtaactttttatgaaagtttgtgtaaaaaagtgcattggaaattgaaaattttaacatttttaaagaataattacttaatatagaatatttaa 431739  T
Q  106 agagtgtcc-cgaggcactcgttaaca 131  Q
    ||||| |||  | ||||||||||||||    
T  431740 agagtatcctgggggcactcgttaaca 431766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 4654988 - 4655074
Alignment:
Q  27 aaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||  ||| ||||| |   |||||||||||||||||||||||||    
T  4654988 aaagtttgtgtaatcggtgcattgaaaattgaaaactttgatattttaaaaaaataattatctaatttagcatgcttaaagagtgtc 4655074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 30523103 - 30523029
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaa 80  Q
    |||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |||  |||||||    
T  30523103 cttagatggtaactttttatgaaagtttgtgtaattagtacattggaaattgaaaactttgacattgttaaagaa 30523029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 6411380 - 6411485
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||  ||||||||||| ||||| ||| |||||||| |||||||||||||||||||| | ||||  ||||||||| | ||| |||||||||| ||||    
T  6411380 cttaaataataactttttataaaagtatgtgtaatcagtacattggaaattgaaaacttttaaattttaaaagaataattactttatttagcatgtttaa 6411479  T
Q  106 agagtg 111  Q
    | ||||    
T  6411480 aaagtg 6411485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 12205619 - 12205530
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaattta 95  Q
    ||||||||||||||||| ||||| ||||| |||| | |||||||| |||| ||||||||||||||||||||| ||||| | |||||||||    
T  12205619 ttaaatggtaactttttttgaaaatttgtgtaataatgtgcattgcaaatggaaaactttgatatttataaaaaataattacttaattta 12205530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 33634805 - 33634930
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaa 106  Q
    |||||| |||||||||||| |||  ||||  ||||||| |||||||||||||||||||| ||||||  || |||||| |  |||||||| ||| ||||||    
T  33634805 ttaaatagtaactttttataaaaagttgtgcaatcagtacattggaaattgaaaactttcatattttaaacgaataattatttaatttaacatccttaaa 33634904  T
Q  107 gagtgtcccgag-gcactcgttaaca 131  Q
    ||||||| | || |||||||||||||    
T  33634905 gagtgtctcaagtgcactcgttaaca 33634930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 18684453 - 18684334
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctt--aaagagtgt 112  Q
    ||||||||||||||| ||||| || | | | ||||||||||||||   | |||  ||| |||||||||||||| |||||||||||||||  |||||||||    
T  18684453 taactttttatgaaaatttgtgtatttaatacattggaaattgaattgtatgacttttttaaagaataacttcctaatttagcatgctttaaaagagtgt 18684354  T
Q  113 cccgag-gcactcgttaaca 131  Q
    |||||| |||||||||||||    
T  18684353 cccgagagcactcgttaaca 18684334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 29685719 - 29685836
Alignment:
Q  15 taactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg-tc 113  Q
    ||||||||||  ||| ||||| ||||| |||| ||| ||||||| |||||| | ||||  ||||||||| | ||| |||||||||| |||||||||| ||    
T  29685719 taactttttacaaaaatttgtgtaatcggtgcgttgaaaattgagaacttttaaattttgaaagaataattactttatttagcatgtttaaagagtgctc 29685818  T
Q  114 ccgaggcactcgttaaca 131  Q
    | ||||||||||||||||    
T  29685819 cggaggcactcgttaaca 29685836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 42342497 - 42342572
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataa 83  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||  |||||||||| ||||| |||| ||||||||||    
T  42342497 ttaaatggtaactttttatgaaaatttgtttaatcagtgtatt-aaaattgaaaattttgacatttttaaagaataa 42342572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 8964477 - 8964387
Alignment:
Q  21 tttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    ||||||||| ||||| |||||| |||||||||||||||||  ||| |  ||| |||||||||| | |||||||||| ||||||||| ||||    
T  8964477 tttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaacagtg 8964387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 13538497 - 13538391
Alignment:
Q  5 tcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    |||||||| ||||||||||||||||  || | || ||| ||||||||||||||||   |||||  ||| |||||||||| ||  |||||||| |||||||    
T  13538497 tcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttctaatttagtatgctta 13538398  T
Q  105 aagagtg 111  Q
    |||||||    
T  13538397 aagagtg 13538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 30869601 - 30869692
Alignment:
Q  39 atcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcc-cgaggcactcgttaaca 131  Q
    ||||||| ||| ||||||||||||||| | |||| |||||||||| |  |||||||||||||||||||||||| ||  ||| ||||||||||||    
T  30869601 atcagtgtattagaaattgaaaactttaacatttttaaagaataaat--ttaatttagcatgcttaaagagtgccctggagacactcgttaaca 30869692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 12762896 - 12762981
Alignment:
Q  25 tgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagt 110  Q
    ||||||||||| ||| ||||||||||||||||||||| ||| | |||| | |||||||| | ||||||||   |||||||||||||    
T  12762896 tgaaagtttgtgtaaacagtgcattggaaattgaaaattttaacattttttaagaataattacttaattttaaatgcttaaagagt 12762981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 25627040 - 25626947
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaag 107  Q
    ||||| ||||||||||||| || |||||| || ||||||||| ||||||||| | |||| |||||||||| |  ||||||||| || |||||||    
T  25627040 gtaaccttttatgaaagttggtgtaatcaatgtattggaaatcgaaaactttaaaatttttaaagaataattatttaatttagaatacttaaag 25626947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 32066822 - 32066745
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataa 83  Q
    |||||||  ||||||||||||||||||||| |||| ||| |||| |||||| |||||||||| ||||| ||| |||||    
T  32066822 cttaaattataactttttatgaaagtttgtgtaattagtacattagaaattaaaaactttgacatttaaaaaaaataa 32066745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 3191259 - 3191187
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaaga 79  Q
    ||||||| ||| ||||||| |||||||||||||||| |||| || |||||||||| ||| |||||| ||||||    
T  3191259 ttaaatgataaatttttataaaagtttgtataatcaatgcaatgaaaattgaaaaatttaatatttttaaaga 3191187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 9049156 - 9049256
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||  ||||||||||| ||| ||||| |||| | ||||||| |||||||||| ||| | ||||  ||||||||| | ||||||||| |||||||||    
T  9049156 cttaaataataactttttataaaaatttgtgtaattaatgcattgaaaattgaaaaatttaacattttaaaagaataattacttaatttaacatgcttaa 9049255  T
Q  106 a 106  Q
    |    
T  9049256 a 9049256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 15806054 - 15806105
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaacttt 65  Q
    |||||||||||| ||||||||| |||||| ||||||| ||||||||||||||    
T  15806054 gtaactttttataaaagtttgtgtaatcaatgcattgaaaattgaaaacttt 15806105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 21277655 - 21277517
Alignment:
Q  3 gatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgct 102  Q
    |||||||||||||||  |||||| ||||||  | ||||||||||||| | ||||||||| ||||| ||||  ||| ||||| | |||||||||  || ||    
T  21277655 gatcttaaatggtaaacttttataaaagttactgtaatcagtgcatt-gcaattgaaaagtttgacattttaaaaaaataattacttaatttaaaatact 21277557  T
Q  103 taaagagtg-tcccgaggcactcgttaacacaacctttaa 141  Q
    ||||||||| | | || |||||||||||||  ||||||||    
T  21277556 taaagagtgatgcggaagcactcgttaacaagacctttaa 21277517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 11385552 - 11385446
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| ||||||||||| ||||||||| | || | ||| ||||||||| ||||| ||||||| || |||||||||| | ||| |||||| ||  ||||    
T  11385552 ttaaatgataactttttataaaagtttgtgttataaagtgtattggaaatagaaaaatttgataattttaaagaataattacttgatttagaatatttaa 11385453  T
Q  106 agagtgt 112  Q
    |||||||    
T  11385452 agagtgt 11385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 32859845 - 32859759
Alignment:
Q  46 cattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcc-cgaggcactcgttaaca 131  Q
    ||||||||||||||   |||||  ||| |||||||||||||| |||||||||||| |||||||||| ||  | ||||||||||||||    
T  32859845 cattggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgtttaaagagtgccctgggggcactcgttaaca 32859759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 9448542 - 9448465
Alignment:
Q  20 ttttatgaaagtttgtata-atcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttag 96  Q
    ||||||||||||| ||| | |||||||||||| |||||||||| ||||| | || |||| ||||||| ||||||||||    
T  9448542 ttttatgaaagttagtacacatcagtgcattgaaaattgaaaagtttgacagttttaaaaaataactacttaatttag 9448465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 3666441 - 3666533
Alignment:
Q  3 gatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaattta 95  Q
    ||||||||||  ||| ||||||||||||||| | |||||| || ||||  |||| |||| ||| |||||| |||||||||| | |||||||||    
T  3666441 gatcttaaataataattttttatgaaagtttatgtaatcaatgtattgagaattaaaaattttaatatttttaaagaataattacttaattta 3666533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 3882698 - 3882590
Alignment:
Q  24 atgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccga-ggcac 122  Q
    |||||| | ||| |||||| ||||||| |||  ||||  |||||  ||| |||||||||| | |||| ||||| |||||||||||||| ||||| |||||    
T  3882698 atgaaaatgtgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggcac 3882599  T
Q  123 tcgttaaca 131  Q
    |||||||||    
T  3882598 tcgttaaca 3882590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 18223186 - 18223083
Alignment:
Q  34 gtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccg-aggcactcgttaacac 132  Q
    ||||||||| |||||||||||||||||  ||  || ||| |||||||||| | |||  ||| | ||||||||| ||||||||| || ||||||||||||     
T  18223186 gtataatcaatgcattggaaattgaaatattctatttttttaaagaataattgcttgttttggtatgcttaaaaagtgtcccgaagacactcgttaacaa 18223087  T
Q  133 aacc 136  Q
    ||||    
T  18223086 aacc 18223083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 30822764 - 30822851
Alignment:
Q  44 tgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgaggcactcgttaaca 131  Q
    |||||||||||||||||||||||| ||||  ||| ||||| | |||||||||  | |||| |||||||  ||||  ||||||||||||    
T  30822764 tgcattggaaattgaaaactttgacattttcaaaaaataattacttaatttaaaaagctttaagagtgctccgaaacactcgttaaca 30822851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 36480417 - 36480374
Alignment:
Q  89 taatttagcatgcttaaagagtgtcccgagg-cactcgttaaca 131  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  36480417 taatttagaatgcttaaagagtgtcccgaggacactcgttaaca 36480374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 28695619 - 28695680
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataat-cagtgcattggaaattgaaaactttga 67  Q
    |||||| |||||||||||| ||||||||| ||||  | |||||||||||||||| |||||||    
T  28695619 ttaaatagtaactttttataaaagtttgtgtaataaattgcattggaaattgaacactttga 28695680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 43678554 - 43678623
Alignment:
Q  3 gatcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatattt 72  Q
    ||||||||||| ||| ||||| | ||||||||| |||| | | ||||| |||||||||||||| ||||||    
T  43678554 gatcttaaatgataattttttttaaaagtttgtgtaattaatacattgaaaattgaaaactttaatattt 43678623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 16717680 - 16717585
Alignment:
Q  35 tataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccgaggcactcgttaaca 131  Q
    |||||||| ||| ||||||||  |||  ||| || ||| |||||||||| | |||| ||||| ||||||||||||||||  || |||||||||||||    
T  16717680 tataatcaatgctttggaaatcaaaatatttaatttttttaaagaataattacttattttagaatgcttaaagagtgtctgga-gcactcgttaaca 16717585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 26793 - 26696
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||  ||| ||||| | |||||||||||||||||||||||||    
T  26793 gtaactttttacgaaagtttgtgtaatcagtgcattgaaaattgaaaactttgacattttaaaataataattacttaatttagcatgcttaaagagtg 26696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 10364843 - 10364754
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaattta 95  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||    
T  10364843 cttaaatagtaaatttttatgaaagttcgtataatcagtgcattgtaaattgaaaactttgatatttttaaagaataattacttaattta 10364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 29716771 - 29716895
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||| ||||  ||| ||||| | || ||||||| ||||||||    
T  29716771 ttaaatggtaaccttttatgaaagtttgtgtaataaagtgcattggaaattgaaaactttgacattttaaaaaaataattgctgaatttagaatgcttaa 29716870  T
Q  106 agagtgtc-ccgaggcactcgttaa 129  Q
    | ||||||   ||||||||||||||    
T  29716871 aaagtgtcatggaggcactcgttaa 29716895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 13445745 - 13445863
Alignment:
Q  14 gtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtc 113  Q
    |||| ||||||||||||||||| | || ||||| || ||||||||||||||| | |||| |||||||||  | |||||||||||||||||||||||||      
T  13445745 gtaattttttatgaaagtttgtgtgattagtgcttttgaaattgaaaactttcacatttttaaagaatacttacttaatttagcatgcttaaagagtgca 13445844  T
Q  114 ccgagg-cactcgttaaca 131  Q
    ||| || ||||||||||||    
T  13445845 ccggggacactcgttaaca 13445863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 23344671 - 23344568
Alignment:
Q  7 ttaaatggtaactttttatgaaagtttgtataatca-gtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||||||||||||||| ||||||||| |||| | ||||||||||||||||| ||||||| |||| |||||||  | | |||||||||| | ||||||    
T  23344671 ttaaatggtaactttttataaaagtttgtgtaataaagtgcattggaaattgaacactttgacatttgtaaagaaatattacttaatttagaaagcttaa 23344572  T
Q  106 agag 109  Q
    ||||    
T  23344571 agag 23344568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 354585 - 354694
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    ||||||| |||||||||||| ||||| | | ||||||||||||| ||| ||  ||||||| |  |||  ||||||||  ||| |||||||| ||||||||    
T  354585 cttaaatagtaactttttataaaagtctttgtaatcagtgcattagaagttagaaacttttaagttttaaaagaatactttcataatttagaatgcttaa 354684  T
Q  106 agagtgtccc 115  Q
    | ||||||||    
T  354685 atagtgtccc 354694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 34552365 - 34552406
Alignment:
Q  42 agtgcattggaaattgaaaactttgatatttataaagaataa 83  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  34552365 agtgcattggaaattgaaaactttaatatttttaaagaataa 34552406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 3753103 - 3753206
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagt-gcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaag 107  Q
    |||| ||||| |||||| ||||||||| ||| || | | |||| |||||||||||||| | ||||  ||||||||| | ||| ||||| |||||||||||    
T  3753103 aaatagtaacattttataaaagtttgtgtaaccatttgaattgaaaattgaaaacttttaaattttgaaagaataattactttatttatcatgcttaaag 3753202  T
Q  108 agtg 111  Q
    ||||    
T  3753203 agtg 3753206  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 3769326 - 3769429
Alignment:
Q  9 aaatggtaactttttatgaaagtttgtataatcagt-gcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaag 107  Q
    |||| ||||| |||||| ||||||||| |||||| | | |||| |||||||||||||| | ||||  ||||||||| | ||| | ||| |||||||||||    
T  3769326 aaatagtaacattttataaaagtttgtgtaatcatttgaattgaaaattgaaaacttttaaattttgaaagaataattactttaattatcatgcttaaag 3769425  T
Q  108 agtg 111  Q
    ||||    
T  3769426 agtg 3769429  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 30509385 - 30509290
Alignment:
Q  37 taatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg-tcccgaggcactcgttaaca 131  Q
    |||||| ||||||| |||| ||||  |||||| ||| |||||||||| | |||| ||| | |||||||||||||| ||| ||| ||||||||||||    
T  30509385 taatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttggtatgcttaaagagtgttccggagacactcgttaaca 30509290  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 34552510 - 34552632
Alignment:
Q  7 ttaaatggtaactttttatgaaagtt-tgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaa 105  Q
    |||||||| ||||||||||||||||| ||||| |  ||| ||||| ||||| |||||||| |||||| |||||||||| | || ||| ||  ||||||||    
T  34552510 ttaaatggcaactttttatgaaagttgtgtatta-aagtacattgaaaattaaaaactttaatatttttaaagaataattactaaatgtaaaatgcttaa 34552608  T
Q  106 agagtgtcccgag-gcactcgtta 128  Q
    || |||| ||| | ||||||||||    
T  34552609 agtgtgtaccgggtgcactcgtta 34552632  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 25028703 - 25028829
Alignment:
Q  5 tcttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgctta 104  Q
    ||||||||  ||||||||||| |||   ||| || ||| ||||||| ||||||||   |||||  ||| |||||||||| ||  |||||| | ||| |||    
T  25028703 tcttaaattttaactttttataaaaacgtgtgtattcaatgcattgaaaattgaactgtttgacttttttaaagaataattttctaattttgaatgttta 25028802  T
Q  105 aagagtgtcccgaggcactcgttaaca 131  Q
    |||||||||| |||||| |||||||||    
T  25028803 aagagtgtccggaggcattcgttaaca 25028829  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 5704578 - 5704668
Alignment:
Q  19 tttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtg 111  Q
    ||||||||||||||| | |||||| | ||||| ||||||||||||   | ||||  ||| ||||| | |||||||||||||| ||||||||||    
T  5704578 tttttatgaaagtttatgtaatcaatacattgaaaattgaaaacta--acattttaaaaaaataattacttaatttagcatgtttaaagagtg 5704668  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 34185070 - 34185158
Alignment:
Q  44 tgcattggaaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtccc-gaggcactcgttaaca 131  Q
    ||||||||||||||||  |||| ||  || |||||||||| ||||| |||  | |||||||||||||| ||| |||||||| |||||||    
T  34185070 tgcattggaaattgaagtctttaatcattttaaagaataatttctttattaggaatgcttaaagagtgccccggaggcacttgttaaca 34185158  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 19667 - 19578
Alignment:
Q  6 cttaaatggtaactttttatgaaagtttgtataatcagtgcattggaaattgaaaactttgatatttataaagaataacttcttaattta 95  Q
    |||||||| ||||||||||||||| ||||| |||||  |  |||  |||||||||||||| | |||| |||||||||| | |||||||||    
T  19667 cttaaatgataactttttatgaaaatttgtgtaatcgatatattaaaaattgaaaactttaacatttttaaagaataattacttaattta 19578  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 5816 - 5752
Alignment:
Q  52 aaattgaaaactttgatatttataaagaataacttcttaatttagcatgcttaaagagtgtcccg 116  Q
    |||||||||||||||| |||| ||||||| || | |||||||||  || ||||||||||| ||||    
T  5816 aaattgaaaactttgacatttttaaagaaaaattacttaatttaaaattcttaaagagtgccccg 5752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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