View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_high_73 (Length: 237)

Name: NF1433_high_73
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_high_73
NF1433_high_73
[»] chr2 (23 HSPs)
chr2 (1-221)||(9321686-9321906)
chr2 (1-210)||(10372588-10372797)
chr2 (3-209)||(9292638-9292841)
chr2 (11-145)||(8572745-8572879)
chr2 (1-186)||(9060332-9060517)
chr2 (1-145)||(9316793-9316940)
chr2 (1-97)||(9329418-9329514)
chr2 (1-160)||(10353901-10354060)
chr2 (2-104)||(10336623-10336725)
chr2 (1-99)||(10348620-10348718)
chr2 (20-145)||(14551091-14551215)
chr2 (13-100)||(7114891-7114978)
chr2 (1-96)||(12018148-12018243)
chr2 (1-97)||(9357935-9358031)
chr2 (12-104)||(12005410-12005502)
chr2 (12-96)||(12011838-12011922)
chr2 (1-104)||(9283408-9283511)
chr2 (2-104)||(9275335-9275437)
chr2 (17-96)||(9365415-9365494)
chr2 (1-96)||(7612716-7612811)
chr2 (12-92)||(11986770-11986850)
chr2 (1-49)||(8578759-8578807)
chr2 (185-219)||(9329305-9329339)
[»] chr3 (2 HSPs)
chr3 (2-160)||(37463278-37463436)
chr3 (1-61)||(39428733-39428793)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-114)||(5261-5374)
[»] chr4 (2 HSPs)
chr4 (2-160)||(26575635-26575793)
chr4 (20-104)||(561982-562066)
[»] chr8 (1 HSPs)
chr8 (2-118)||(41965957-41966073)
[»] chr1 (2 HSPs)
chr1 (2-129)||(29452586-29452713)
chr1 (2-145)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (20-95)||(36225571-36225646)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9321906 - 9321686
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9321906 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattcc 9321807  T
Q  101 ctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321806 ctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaacc 9321707  T
Q  201 atcctttcaccaccaacatca 221  Q
    |||||||||||||||| ||||    
T  9321706 atcctttcaccaccaaaatca 9321686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 10372797 - 10372588
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| |||||||  |||||||||| ||| | |||||||||||||| ||| ||||||||    
T  10372797 cttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattcc 10372698  T
Q  101 ctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgat---gatcatgatgatttctctaaatccatgatgattccactca 197  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||   ||| |||||||||||||||||||   || |||||||||||    
T  10372697 ctcaatcgatccttaatccttcaacgcaaattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatc---gaggattccactca 10372601  T
Q  198 accatcctttcac 210  Q
    |||||||||||||    
T  10372600 accatcctttcac 10372588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 9292841 - 9292638
Alignment:
Q  3 taccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccct 102  Q
    |||| |||||||||||||||  ||||||||||| ||| ||||||||||||||| |||||||||| |||  |||||  |||||||| ||||||||||||||    
T  9292841 taccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccct 9292742  T
Q  103 cagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaaccat 202  Q
    ||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||   ||| |||||||||||||||    
T  9292741 caaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatgatgatgatttctccaagtc---gattattccactcaaccat 9292645  T
Q  203 cctttca 209  Q
    |||||||    
T  9292644 cctttca 9292638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 8572745 - 8572879
Alignment:
Q  11 aaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgat 110  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||| |    
T  8572745 aaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgtt 8572844  T
Q  111 ccttaatcattcaacacaaattcgatctctaccaa 145  Q
    |||||||||||| || ||| | |||| ||||||||    
T  8572845 ccttaatcattcgacgcaactacgatatctaccaa 8572879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 9060332 - 9060517
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaa---aat 97  Q
    |||||||||  |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||  |||||| | ||||||   |||    
T  9060332 cttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataat 9060431  T
Q  98 tccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgat 186  Q
     |||||| |||||   ||||| ||| |||||||| ||||||||||||||||||| ||||||   ||||||||||||||||||| |||||    
T  9060432 cccctcaatcgatttataatccttcgacacaaatccgatctctaccaactccaagtcgatg---atgatgatttctctaaatcaatgat 9060517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 9316940 - 9316793
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaa---aat 97  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||  |||| ||||| ||| |||||||||||||||| ||||||   |||    
T  9316940 cttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataat 9316841  T
Q  98 tccctcagtcgatccttaatcattcaacacaaattcgatctctaccaa 145  Q
    ||||||| ||||||||||||| ||||  |||||| ||| |||||||||    
T  9316840 tccctcaatcgatccttaatccttcattacaaatccgaactctaccaa 9316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9329514 - 9329418
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaat 97  Q
    ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| ||||||  |||||||| |||||||||    
T  9329514 cttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 10354060 - 10353901
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattcc 100  Q
    ||||||||||| ||||||||||  ||||||||||||||| |||||| |||||||| ||||||||||  || | |||||||||||||| |||| |||||||    
T  10354060 cttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcc 10353961  T
Q  101 ctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 160  Q
    | || || |||||||||  ||| |  |||||||||| |||||||| |  |||||||||||    
T  10353960 cccaatcaatccttaattcttcgattcaaattcgatatctaccaaattaaaatcgatgat 10353901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 10336725 - 10336623
Alignment:
Q  2 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 101  Q
    |||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| ||| | |||||||||||||| ||  |||||||||    
T  10336725 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccc 10336626  T
Q  102 tca 104  Q
    |||    
T  10336625 tca 10336623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 10348718 - 10348620
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattc 99  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||| || ||||||||    
T  10348718 cttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 14551215 - 14551091
Alignment:
Q  20 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatca 119  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||| ||| |||||||||| ||||| || ||||||||||||| | | |||||||||     
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatcc 14551117  T
Q  120 ttcaacacaaattcgatctctaccaa 145  Q
    ||| |||||| | | |||||||||||    
T  14551116 ttcgacacaagtccaatctctaccaa 14551091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 7114891 - 7114978
Alignment:
Q  13 atcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattcc 100  Q
    ||||||||| | ||||||||||||||| ||||||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||    
T  7114891 atcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattcc 7114978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 12018148 - 12018243
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaa 96  Q
    |||||| |||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||||    
T  12018148 cttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9358031 - 9357935
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaat 97  Q
    |||||| ||||||||||||||||  ||  |||||||||| ||||||||||||||| |||||||||| ||| ||||||| |||||||| |||||||||    
T  9358031 cttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 12005410 - 12005502
Alignment:
Q  12 aatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctca 104  Q
    |||||||||||| |||||| ||||||||  |||| |||||||||||||||||||| ||| |||||| |||||||||||| |||||||| ||||    
T  12005410 aatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttcatctaaaaaattctctca 12005502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 12011838 - 12011922
Alignment:
Q  12 aatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaa 96  Q
    |||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||||    
T  12011838 aatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9283408 - 9283511
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattcc 100  Q
    |||||| || |||||||| |||| |||||||||||||||||||||||||  |||| |||| ||||| ||| | |||||||||||||| ||||||| ||||    
T  9283408 cttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttcc 9283507  T
Q  101 ctca 104  Q
    ||||    
T  9283508 ctca 9283511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 9275437 - 9275335
Alignment:
Q  2 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 101  Q
    ||||| ||| |||||||||||  |||||||||||  || ||||||||||||||  | || ||||| ||| ||||||||||||||||||||||||||||||    
T  9275437 ttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattccc 9275338  T
Q  102 tca 104  Q
    |||    
T  9275337 tca 9275335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  17 cttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaa 96  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||| |||  ||||| |||||| |||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7612811 - 7612716
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaa 96  Q
    |||||||||| || | || |||| ||||||||||| ||||||||| ||||||||| |||| ||||| ||| ||||||  |||||||| ||||||||    
T  7612811 cttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 11986770 - 11986850
Alignment:
Q  12 aatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctca 92  Q
    |||||||||||| |||||| ||||||||  |||| |||||||||||||| ||||| ||| |||||| ||| ||||| ||||    
T  11986770 aatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttcacctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8578759 - 8578807
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcactt 49  Q
    |||||||||| |||| ||||||| ||||||||||| |||||||||||||    
T  8578759 cttaccggtacaatcccttctccgattccgatcaatttctaaatcactt 8578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 9329339 - 9329305
Alignment:
Q  185 atgattccactcaaccatcctttcaccaccaacat 219  Q
    ||||||||||||||||||||||||| |||||||||    
T  9329339 atgattccactcaaccatcctttcagcaccaacat 9329305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 37463436 - 37463278
Alignment:
Q  2 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 101  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||  |||||||||| ||| |||||||||||||||||||||||||| |||    
T  37463436 ttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccc 37463337  T
Q  102 tcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 160  Q
    ||| || |||| ||||||||| | |||| | |||| |||||||||||||||||||||||    
T  37463336 tcaatcaatccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatgat 37463278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 39428793 - 39428733
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatc 61  Q
    |||||||||  |||| || |||||||||||||||||||| |||| | |||||||| |||||    
T  39428793 cttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc 39428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5374 - 5261
Alignment:
Q  1 cttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||||    
T  5374 cttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattcc 5275  T
Q  101 ctcagtcgatcctt 114  Q
    |||| | |||||||    
T  5274 ctcaatagatcctt 5261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 26575793 - 26575635
Alignment:
Q  2 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 101  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||  || | |||||||||||||| |||| ||||||||    
T  26575793 ttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattccc 26575694  T
Q  102 tcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 160  Q
     || ||||||||||||| ||| |  |||||||||| ||||||||||  ||||| |||||    
T  26575693 ccaatcgatccttaatccttcgattcaaattcgatatctaccaacttgaaatcaatgat 26575635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 562066 - 561982
Alignment:
Q  20 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctca 104  Q
    |||| |||||||| || ||| ||||  |||||||||||||||||||| ||| ||||||  |||||||| |||||||| |||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctca 561982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 41965957 - 41966073
Alignment:
Q  2 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 101  Q
    ||||||||||||||| |||||| |||||||||||| || |||||||||  |||| |||||||||| ||| |||||||||||||||| |||| ||| ||||    
T  41965957 ttaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccc 41966056  T
Q  102 tcagtcgatccttaatc 118  Q
    ||| |||||||||||||    
T  41966057 tcaatcgatccttaatc 41966073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 29452586 - 29452713
Alignment:
Q  2 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 101  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||| ||| |||||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 29452685  T
Q  102 tcagtcgatccttaatcattcaacacaa 129  Q
    ||| ||| ||||||||| ||| ||||||    
T  29452686 tcaatcgttccttaatccttcgacacaa 29452713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 29467060 - 29467203
Alignment:
Q  2 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 101  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||| |||  ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccc 29467159  T
Q  102 tcagtcgatccttaatcattcaacacaaattcgatctctaccaa 145  Q
    ||| ||| | ||||||| ||| |||||| | |||| ||||||||    
T  29467160 tcaatcgtttcttaatccttcgacacaactccgatttctaccaa 29467203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 36225646 - 36225571
Alignment:
Q  20 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaa 95  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||||| ||||||  || ||||| |||||||    
T  36225646 ctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University