View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_high_79 (Length: 232)

Name: NF1433_high_79
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_high_79
NF1433_high_79
[»] chr1 (23 HSPs)
chr1 (1-222)||(25944397-25944618)
chr1 (128-199)||(9656638-9656709)
chr1 (34-82)||(29793624-29793672)
chr1 (35-113)||(4757403-4757481)
chr1 (128-192)||(51695506-51695570)
chr1 (128-187)||(7137009-7137068)
chr1 (122-154)||(601074-601106)
chr1 (128-192)||(27820348-27820412)
chr1 (128-192)||(35179134-35179198)
chr1 (128-184)||(45975693-45975749)
chr1 (34-113)||(6292558-6292636)
chr1 (34-113)||(10199334-10199413)
chr1 (137-191)||(4576801-4576855)
chr1 (129-199)||(7218086-7218156)
chr1 (39-113)||(31517671-31517745)
chr1 (27-77)||(48748514-48748564)
chr1 (135-192)||(34290231-34290288)
chr1 (159-223)||(1730855-1730919)
chr1 (27-79)||(12564418-12564470)
chr1 (34-78)||(33976278-33976322)
chr1 (35-79)||(37593611-37593655)
chr1 (39-79)||(43420357-43420397)
chr1 (34-114)||(51929388-51929468)
[»] chr3 (13 HSPs)
chr3 (27-122)||(11253557-11253652)
chr3 (34-113)||(45541636-45541715)
chr3 (135-199)||(1217818-1217882)
chr3 (136-187)||(44747427-44747478)
chr3 (140-178)||(14145921-14145959)
chr3 (129-179)||(21367675-21367725)
chr3 (29-79)||(22667502-22667552)
chr3 (29-79)||(22724141-22724191)
chr3 (159-200)||(13709865-13709906)
chr3 (26-79)||(36189728-36189781)
chr3 (50-83)||(37138377-37138410)
chr3 (135-192)||(39602228-39602285)
chr3 (38-122)||(21872225-21872309)
[»] chr2 (24 HSPs)
chr2 (40-113)||(29430823-29430896)
chr2 (130-199)||(18179253-18179322)
chr2 (34-110)||(41170678-41170754)
chr2 (128-199)||(18066116-18066187)
chr2 (33-113)||(5902476-5902554)
chr2 (34-79)||(40851697-40851742)
chr2 (33-121)||(33192259-33192346)
chr2 (128-199)||(11513886-11513957)
chr2 (128-199)||(39983330-39983401)
chr2 (128-179)||(41293174-41293225)
chr2 (128-194)||(10563569-10563635)
chr2 (39-113)||(40943978-40944052)
chr2 (34-79)||(3458694-3458739)
chr2 (34-79)||(13866977-13867022)
chr2 (27-76)||(18525160-18525209)
chr2 (34-79)||(22878197-22878242)
chr2 (162-199)||(29300633-29300670)
chr2 (34-74)||(1830143-1830183)
chr2 (34-110)||(8017502-8017578)
chr2 (136-192)||(9477947-9478003)
chr2 (135-187)||(11488277-11488329)
chr2 (38-78)||(14666648-14666688)
chr2 (133-185)||(26143656-26143708)
chr2 (27-79)||(38259606-38259658)
[»] chr5 (19 HSPs)
chr5 (135-199)||(41957469-41957533)
chr5 (23-79)||(36796622-36796678)
chr5 (128-186)||(4014435-4014493)
chr5 (23-109)||(38033942-38034028)
chr5 (128-192)||(39105459-39105523)
chr5 (128-187)||(7984969-7985028)
chr5 (34-77)||(14706210-14706253)
chr5 (35-113)||(11457163-11457241)
chr5 (34-75)||(1084065-1084106)
chr5 (36-113)||(1899219-1899295)
chr5 (34-115)||(2568721-2568802)
chr5 (128-177)||(3970691-3970740)
chr5 (34-79)||(4855794-4855839)
chr5 (24-69)||(28578954-28578999)
chr5 (34-83)||(31723900-31723949)
chr5 (34-75)||(34198524-34198565)
chr5 (27-119)||(10391401-10391493)
chr5 (128-192)||(36318769-36318833)
chr5 (39-75)||(40534302-40534338)
[»] chr7 (16 HSPs)
chr7 (27-110)||(30535631-30535714)
chr7 (128-199)||(40688997-40689068)
chr7 (34-110)||(15321710-15321786)
chr7 (128-178)||(36517588-36517638)
chr7 (34-83)||(529457-529506)
chr7 (27-112)||(19302482-19302566)
chr7 (135-192)||(44821954-44822011)
chr7 (128-187)||(6601367-6601426)
chr7 (39-113)||(8094371-8094445)
chr7 (26-64)||(12110812-12110850)
chr7 (34-107)||(32410611-32410684)
chr7 (34-71)||(47046034-47046071)
chr7 (130-199)||(47177624-47177693)
chr7 (23-79)||(22387811-22387867)
chr7 (139-199)||(27548251-27548311)
chr7 (135-187)||(43648240-43648292)
[»] chr4 (16 HSPs)
chr4 (34-103)||(1017103-1017172)
chr4 (27-80)||(18512434-18512487)
chr4 (27-83)||(52333693-52333749)
chr4 (34-83)||(7101969-7102018)
chr4 (34-79)||(18628479-18628524)
chr4 (33-113)||(50298581-50298660)
chr4 (161-199)||(3175939-3175977)
chr4 (135-199)||(9841054-9841116)
chr4 (34-79)||(19429396-19429441)
chr4 (135-207)||(29601026-29601099)
chr4 (34-79)||(53138102-53138147)
chr4 (135-187)||(16199999-16200051)
chr4 (135-199)||(20031737-20031801)
chr4 (23-79)||(30338530-30338586)
chr4 (35-79)||(39931301-39931345)
chr4 (127-187)||(55302249-55302309)
[»] chr8 (17 HSPs)
chr8 (128-187)||(27028831-27028890)
chr8 (33-123)||(1821884-1821974)
chr8 (33-123)||(1856329-1856419)
chr8 (128-189)||(30251465-30251526)
chr8 (142-179)||(30947490-30947527)
chr8 (23-79)||(14926897-14926953)
chr8 (50-109)||(26499785-26499844)
chr8 (34-79)||(7714341-7714386)
chr8 (38-83)||(9700096-9700141)
chr8 (135-192)||(9956832-9956889)
chr8 (35-79)||(778488-778532)
chr8 (23-83)||(1117402-1117462)
chr8 (133-185)||(1433550-1433602)
chr8 (128-192)||(11415149-11415213)
chr8 (135-187)||(11569475-11569527)
chr8 (132-192)||(30013213-30013273)
chr8 (128-192)||(43717948-43718012)
[»] chr6 (14 HSPs)
chr6 (26-75)||(13908343-13908392)
chr6 (128-189)||(34430472-34430533)
chr6 (135-187)||(835267-835319)
chr6 (128-192)||(31624085-31624149)
chr6 (27-77)||(7351590-7351640)
chr6 (55-113)||(11600821-11600879)
chr6 (60-113)||(3775080-3775133)
chr6 (48-113)||(32976043-32976108)
chr6 (134-194)||(837233-837293)
chr6 (35-83)||(3180996-3181044)
chr6 (128-192)||(8010352-8010416)
chr6 (49-113)||(11340566-11340630)
chr6 (135-199)||(31671092-31671156)
chr6 (39-107)||(32843143-32843211)
[»] scaffold0020 (1 HSPs)
scaffold0020 (34-121)||(159899-159986)
[»] scaffold0549 (2 HSPs)
scaffold0549 (49-113)||(1665-1729)
scaffold0549 (49-113)||(3755-3819)
[»] scaffold0221 (1 HSPs)
scaffold0221 (127-187)||(22231-22291)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25944618 - 25944397
Alignment:
Q  1 tcacttactataagatatatacggcttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25944618 tcacttactataagatatatatggcttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaa 25944519  T
Q  101 cagcttatgacatatctataaatgttgtaagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25944518 cagcttatgacatatctataaatgttgtaagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaat 25944419  T
Q  201 ggtttgattttatcttattttt 222  Q
    ||||||||||||||||||||||    
T  25944418 ggtttgattttatcttattttt 25944397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 9656709 - 9656638
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||| || ||||||| |||| ||||||    
T  9656709 taagctgttttgagcttattttcataattcatccaggatagcttatgaacacagcttatagcttatatgaaa 9656638  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 29793624 - 29793672
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactatt 82  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  29793624 attgacttatttgagcttatctactgacataaacacttgtgagactatt 29793672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 4757481 - 4757403
Alignment:
Q  35 ttgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||||||||| |||||| || ||||||||||||||||||||| |||| | | || |||| |||||| ||||||||||    
T  4757481 ttgacttatttgagcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacat 4757403  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 51695506 - 51695570
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    ||||||||||||||||||||||||||| |  |||| ||||||||||||||||  || ||||||||    
T  51695506 taagctattttcagcttattttcataaattctccaagatagcttatgaaaacatctgataactta 51695570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 7137009 - 7137068
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    |||| |||||||||||||||||||||| |  |||| |||||||||||||||| |||||||    
T  7137009 taagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 601106 - 601074
Alignment:
Q  122 atgttgtaagctattttcagcttattttcataa 154  Q
    |||||||||||||||||||||||||||||||||    
T  601106 atgttgtaagctattttcagcttattttcataa 601074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 27820348 - 27820412
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    ||||||||||||||||||||||||||| |  |||| |||||||||| ||||| || |||| ||||    
T  27820348 taagctattttcagcttattttcataaattctccaagatagcttataaaaacagcatatagctta 27820412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 35179198 - 35179134
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||| |||||||||||||||||||| |  ||||  ||| ||||||||||| ||||||||||||    
T  35179198 taagctgttttcagcttattttcataagttctccataataacttatgaaaacagcttataactta 35179134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 45975749 - 45975693
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgctt 184  Q
    |||||| |||||||||||||||||||| |  |||| |||||||||||||||| ||||    
T  45975749 taagctgttttcagcttattttcataaattctccaagatagcttatgaaaacagctt 45975693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 6292636 - 6292558
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||||||||| |||||| ||||||||||| ||||| ||||| | ||| | | ||||| | |||||||||||||||||    
T  6292636 attgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaattt-ttaaaacagcttatgacat 6292558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 10199334 - 10199413
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||||||||| |||||| |||| |||||| ||||||||| ||||||| | | || | || |||| ||||||||||||    
T  10199334 attgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacat 10199413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 4576855 - 4576801
Alignment:
Q  137 ttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactt 191  Q
    |||||||||||||||||| | || ||  ||||||||||||||| |||||||||||    
T  4576855 ttcagcttattttcataagttattcaatatagcttatgaaaacagcttataactt 4576801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 7218086 - 7218156
Alignment:
Q  129 aagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||| |||||| ||||||||||||| |  |||||||||| ||||||||||  |||||| |||| ||||||    
T  7218086 aagctgttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaa 7218156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 31517671 - 31517745
Alignment:
Q  39 cttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||||| |||||||||||| ||||| ||||||||||||| ||| | | || |||| |||||| || |||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacat 31517745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 48748514 - 48748564
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgaga 77  Q
    ||||| |||||||||||||| ||||||  | ||||||||||||||||||||    
T  48748514 tgtttgaattgacttatttgagcttatccattgacataaacacttgtgaga 48748564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 34290288 - 34290231
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||||||||||||||||| |  | || |||||||||||||||| ||||||| ||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagctta 34290231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 1730919 - 1730855
Alignment:
Q  159 tccaggatagcttatgaaaaccgcttataacttacatgaaatggtttgattttatcttatttttg 223  Q
    |||| ||| |||||||||||   ||||||||||||||||||| |||||| ||||| |||| ||||    
T  1730919 tccaagattgcttatgaaaataacttataacttacatgaaatagtttgactttattttatctttg 1730855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 12564418 - 12564470
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||| |||||||||||||| |||||| |||||| |||| |||||||| ||||    
T  12564418 tgtttgaattgacttatttgagcttatatactgatataagcacttgtgtgact 12564470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 33976322 - 33976278
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagac 78  Q
    ||||||||||||| ||||||||| |||||| | ||||||||||||    
T  33976322 attgacttatttgagcttatttaatgacatcagcacttgtgagac 33976278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 37593611 - 37593655
Alignment:
Q  35 ttgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||||||||| |||||| ||||| ||||||||||||| |||||    
T  37593611 ttgacttatttgagcttatatactggcataaacacttgttagact 37593655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 43420397 - 43420357
Alignment:
Q  39 cttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||||| |||||| ||| |||||||||||||||||||||    
T  43420397 cttatttgagcttatctacagacataaacacttgtgagact 43420357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 51929388 - 51929468
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacata 114  Q
    |||||||| |||| |||||| ||||||||||| ||| ||||| ||| |||   | || |||| ||||||||||||||||||    
T  51929388 attgacttttttgagcttatctactgacataagcacctgtgacactgtttaagagaacttatgaaaacagcttatgacata 51929468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 11253652 - 11253557
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacatatctataaa 122  Q
    ||||| |||||||||||||| | |||| ||||  ||||| |||||| |||||| ||| | | |||||||||||||| |||||||||||||||||||    
T  11253652 tgtttgaattgacttatttgagattatctactagcataagcacttgagagactgtttggcagaatttataaaaacaacttatgacatatctataaa 11253557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 45541715 - 45541636
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||||||||| ||||||||| ||  |||||||||||| ||||| ||| ||| || |||| |||||||||||||||||    
T  45541715 attgacttatttgagcttatttaatggtataaacacttgtaagactgtttagaagaacttatgaaaacagcttatgacat 45541636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 1217818 - 1217882
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    |||||| |||| |||||||| |  || |||||||||||||||||| |||||||||||||||||||    
T  1217818 ttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaa 1217882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 44747427 - 44747478
Alignment:
Q  136 tttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    ||||||||||||||||||| |  |||| |||||||||||||||| |||||||    
T  44747427 tttcagcttattttcataagttttccaagatagcttatgaaaacagcttata 44747478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 14145959 - 14145921
Alignment:
Q  140 agcttattttcataattaatccaggatagcttatgaaaa 178  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  14145959 agcttattttcataagtaatccaagatagcttatgaaaa 14145921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 21367725 - 21367675
Alignment:
Q  129 aagctattttcagcttattttcataattaatccaggatagcttatgaaaac 179  Q
    ||||| |||||||||||||||||||| |  |||| ||||||||||||||||    
T  21367725 aagctgttttcagcttattttcataagttctccaagatagcttatgaaaac 21367675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 22667552 - 22667502
Alignment:
Q  29 tttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||| |||| |||||||| |||||| ||||||||||| |||||||||||||    
T  22667552 tttcgattggcttatttgagcttatctactgacataagcacttgtgagact 22667502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 22724191 - 22724141
Alignment:
Q  29 tttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||| |||| |||||||| |||||| ||||||||||| |||||||||||||    
T  22724191 tttcgattggcttatttgagcttatctactgacataagcacttgtgagact 22724141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 13709865 - 13709906
Alignment:
Q  159 tccaggatagcttatgaaaaccgcttataacttacatgaaat 200  Q
    ||||||||||||||||||||| | ||||| ||||||||||||    
T  13709865 tccaggatagcttatgaaaacagattataccttacatgaaat 13709906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 36189781 - 36189728
Alignment:
Q  26 ttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||| |||||||||||||| |||||||||||   |||| |||||||||||||    
T  36189781 ttgtttgaattgacttatttgagcttatttactagtataagcacttgtgagact 36189728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 37138410 - 37138377
Alignment:
Q  50 ttatttactgacataaacacttgtgagactattt 83  Q
    |||| |||||||||||||||||||||||||||||    
T  37138410 ttatctactgacataaacacttgtgagactattt 37138377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 39602228 - 39602285
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||| ||||||||||||| |  || | |||||||||||||||| ||||||||||||    
T  39602228 ttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataactta 39602285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 21872225 - 21872309
Alignment:
Q  38 acttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacatatctataaa 122  Q
    |||||||||  ||||| ||||||||||| ||||||||||||| ||| ||| |  || | |||| |||||||||||| || |||||    
T  21872225 acttatttgatcttatctactgacataagcacttgtgagactgtttggaaaagcttttgaaaatagcttatgacatgtccataaa 21872309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 29430896 - 29430823
Alignment:
Q  40 ttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||| |||||| |||||||||||||||||||| |||||||| ||| || |||| |||| ||||||||||||    
T  29430896 ttatttgagcttatctactgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacat 29430823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 18179253 - 18179322
Alignment:
Q  130 agctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||||||| |||| ||||||    
T  18179253 agctattttcagcttattttcgtaagttctccaggatagcttatgaaagcagcttatagcttatatgaaa 18179322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 41170754 - 41170678
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatga 110  Q
    |||| |||||||| | |||| |||| |||||||||||||||||||||||| |||||| |||| |||| || ||||||    
T  41170754 attggcttatttgagtttatctactaacataaacacttgtgagactatttggaataacttatgaaaatagtttatga 41170678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 18066187 - 18066116
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||||||||||| ||||||||| ||| |  |||| |||||||||||||||| ||||||| |||| ||||||    
T  18066187 taagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaa 18066116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 5902476 - 5902554
Alignment:
Q  33 aattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||||||||||  ||||| ||  | ||||||||||||||||||| ||| ||| || |||| |||||||||||||||||    
T  5902476 aattgacttatttgaacttatcta--ggcataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacat 5902554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 40851742 - 40851697
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||||||||||||||||| || |||||||||||| ||||||||||    
T  40851742 attgacttatttgcgcttaattgctgacataaacaattgtgagact 40851697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 33192346 - 33192259
Alignment:
Q  33 aattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacatatctataa 121  Q
    ||||| |||||||| |||||| | ||||||||||||||  |||||||  |||||| || |||| ||||||| |||||||||||| ||||    
T  33192346 aattggcttatttgagcttatctgctgacataaacactcatgagact-gtttgaagaacttatgaaaacagtttatgacatatccataa 33192259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 11513957 - 11513886
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||||||||||||||||||| || || |  |||| ||||||||||||||||  |||||| |||| ||||||    
T  11513957 taagctattttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaa 11513886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 39983401 - 39983330
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    |||||||||||||| |||||||||| |    |||||||||||||||||||||  |||||| |||| ||||||    
T  39983401 taagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagcttatatgaaa 39983330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 41293174 - 41293225
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaac 179  Q
    |||||| |||||||||||| ||||||| || ||||||||||||||| |||||    
T  41293174 taagctgttttcagcttatattcataagtactccaggatagcttatcaaaac 41293225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 10563569 - 10563635
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttaca 194  Q
    ||||||||||||||||||||||| |||    | ||| |||||||||||||||  |||||||||||||    
T  10563569 taagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttataacttaca 10563635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 40944052 - 40943978
Alignment:
Q  39 cttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||||| | |||| || |||||||| ||||||||| ||| ||| ||| | ||||| |||||||||||||||||    
T  40944052 cttatttgagtttatctaatgacataagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 40943978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 3458739 - 3458694
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||||||||||| ||||| |||||| ||||||||||||| |||||    
T  3458739 attgacttatttgagcttacttactggcataaacacttgtcagact 3458694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 13867022 - 13866977
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||| |||||| |||||| ||||| |||||||||||||||||||    
T  13867022 attgacctatttgagcttatctactgccataaacacttgtgagact 13866977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 18525160 - 18525209
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgag 76  Q
    ||||| |||||||||||||| |||||| ||| |||||||||||| |||||    
T  18525160 tgtttgaattgacttatttgagcttatctacagacataaacactcgtgag 18525209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 22878242 - 22878197
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||||||||||| ||||||  |||||||||| |||||||||||||    
T  22878242 attgacttatttgagcttatccactgacataagcacttgtgagact 22878197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 29300670 - 29300633
Alignment:
Q  162 aggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  29300670 aggatagcttatgaaaacaacttataacttacatgaaa 29300633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 1830183 - 1830143
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtg 74  Q
    ||||||||||||| | |||||||||||||||| ||||||||    
T  1830183 attgacttatttgagtttatttactgacataagcacttgtg 1830143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 8017578 - 8017502
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatga 110  Q
    ||||||||||||| | |||| || |||||||| |||||||| || ||||| | | || |||| ||||||||||||||    
T  8017578 attgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagcttatga 8017502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 9478003 - 9477947
Alignment:
Q  136 tttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    ||||| |||||||||||||    |||||||||||||||||||||  |||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttataactta 9477947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 11488329 - 11488277
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    |||||||||||||| ||||||   ||||||||||||||||||| | |||||||    
T  11488329 ttttcagcttatttgcataatctctccaggatagcttatgaaagcagcttata 11488277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 14666688 - 14666648
Alignment:
Q  38 acttatttgcgcttatttactgacataaacacttgtgagac 78  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  14666688 acttatttgagcttatttacttccataaacacttgtgagac 14666648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 26143656 - 26143708
Alignment:
Q  133 tattttcagcttattttcataattaatccaggatagcttatgaaaaccgctta 185  Q
    |||||||||||||||||||||| |  |||| | |||||||||||||| |||||    
T  26143656 tattttcagcttattttcataagttctccaagttagcttatgaaaacagctta 26143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 38259606 - 38259658
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||| |||||| |||||||  ||||||||| ||||||||||||| |||||||    
T  38259606 tgtttgaattgatttatttgatcttatttacggacataaacacttctgagact 38259658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 41957469 - 41957533
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    |||||| ||||||||||||| |  || |||||||||||||||||| |||||||||||||||||||    
T  41957469 ttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaa 41957533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 36796622 - 36796678
Alignment:
Q  23 ggcttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||||||  ||||||||||||| |||||| || ||||||||||||||||||||||    
T  36796622 ggcttgtttggattgacttatttgagcttatctaatgacataaacacttgtgagact 36796678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 4014435 - 4014493
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttat 186  Q
    |||||| |||||||||||||||||||| |  |||| |||||||||||||||| ||||||    
T  4014435 taagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 4014493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 38033942 - 38034028
Alignment:
Q  23 ggcttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatg 109  Q
    |||| |||| |||||||||||||| |||| | ||||| ||||| ||| ||||||||| ||| ||| || |||| |||||||||||||    
T  38033942 ggctagtttaaattgacttatttgagcttttctactggcataagcacctgtgagactgtttggaagaagttattaaaacagcttatg 38034028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 39105523 - 39105459
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    ||||||||||| ||||||||||||||| |  |||| |||||||||||||||| | ||||| ||||    
T  39105523 taagctatttttagcttattttcataagttctccaagatagcttatgaaaacagattatagctta 39105459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 7985028 - 7984969
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    |||||| |||||||||||||||||||| |  |||| |||||||||||||||  |||||||    
T  7985028 taagctgttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttata 7984969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 14706210 - 14706253
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgaga 77  Q
    ||||||||||||| |||||  |||||||||||||||||||||||    
T  14706210 attgacttatttgagcttacctactgacataaacacttgtgaga 14706253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 11457241 - 11457163
Alignment:
Q  35 ttgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||||||||| |||||| || || || |||||||||||||||| ||||||| |  ||||  ||||| ||||||||||    
T  11457241 ttgacttatttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttatgacat 11457163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 1084065 - 1084106
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtga 75  Q
    ||||||||||||| | |||||||||||||||| |||||||||    
T  1084065 attgacttatttgagtttatttactgacataagcacttgtga 1084106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 1899295 - 1899219
Alignment:
Q  36 tgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||||||| |||||||||||  ||||||||  ||||||||| ||||||| |  |||  |||||||||||||||||    
T  1899295 tgacttatttgagcttatttactagcataaacatatgtgagactgttttgaagagctta-caaaacagcttatgacat 1899219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 2568802 - 2568721
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacatat 115  Q
    |||| |||||||| |||||| |||||   ||| |||||| |||||| ||| ||| || |||| |||||||||||||||||||    
T  2568802 attgtcttatttgagcttatctactggtgtaagcacttgagagactgtttagaagaacttatgaaaacagcttatgacatat 2568721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 3970691 - 3970740
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaa 177  Q
    |||||||||||||||||||||||||||    ||||| |||||||||||||    
T  3970691 taagctattttcagcttattttcataagctctccagtatagcttatgaaa 3970740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 4855839 - 4855794
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||||||||||| |||||| || |||| |||||||||||||||||    
T  4855839 attgacttatttgagcttatataatgacttaaacacttgtgagact 4855794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 28578999 - 28578954
Alignment:
Q  24 gcttgtttcaattgacttatttgcgcttatttactgacataaacac 69  Q
    |||||||| |||||||||||||| |||||| |||||||| ||||||    
T  28578999 gcttgtttgaattgacttatttgagcttatctactgacaaaaacac 28578954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 31723949 - 31723900
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattt 83  Q
    ||||||||||||| |||||| ||||  ||||||||||| |||||||||||    
T  31723949 attgacttatttgagcttatgtactagcataaacacttatgagactattt 31723900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 34198565 - 34198524
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtga 75  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  34198565 attgacttatttgagtttatttactaacataaacacttgtga 34198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 10391493 - 10391401
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacatatctat 119  Q
    |||||| |||| |||||||  |||||| | ||| ||||| ||||||||||| | ||| ||| | ||||||||||||  ||||||||| |||||    
T  10391493 tgtttcgattggcttatttaagcttatctgctggcataatcacttgtgagattgtttggaagagtttataaaaacactttatgacatgtctat 10391401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 36318833 - 36318769
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||| |||||||||||||| ||||| |  |||| ||||||||||||||||  |||| ||||||    
T  36318833 taagctgttttcagcttatttacataaattctccaagatagcttatgaaaacaacttaaaactta 36318769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 40534338 - 40534302
Alignment:
Q  39 cttatttgcgcttatttactgacataaacacttgtga 75  Q
    |||||||| | ||||||||||||||||||||||||||    
T  40534338 cttatttgagtttatttactgacataaacacttgtga 40534302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 30535714 - 30535631
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatga 110  Q
    ||||| |||||||||||||| | | ||||||||||||||||||||| |||||| ||||| | || |||| |||||| |||||||    
T  30535714 tgtttgaattgacttatttgagttaatttactgacataaacacttgagagactgttttggagaacttatgaaaacaacttatga 30535631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 40688997 - 40689068
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    |||||| |||| ||||||||||||||| | ||||||||||||||||||| || ||||||| |||| ||||||    
T  40688997 taagctgttttgagcttattttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaa 40689068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 15321710 - 15321786
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatga 110  Q
    ||||||||||||| |||||||||||||| ||| ||||| ||||| | ||||| ||| ||||| |||||| |||||||    
T  15321710 attgacttatttgagcttatttactgacttaagcacttttgagattgttttggatagtttatgaaaacaacttatga 15321786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 36517638 - 36517588
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaa 178  Q
    |||||||||||||| ||||||||||||||  |||| |||||||||||||||    
T  36517638 taagctattttcagtttattttcataatttctccaagatagcttatgaaaa 36517588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 529506 - 529457
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattt 83  Q
    ||||||||||||| |||||| ||||| |||||||||||||||| ||||||    
T  529506 attgacttatttgagcttatctactggcataaacacttgtgaggctattt 529457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 19302482 - 19302566
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgaca 112  Q
    ||||| |||||||||||||| |||||| |||||||||||    |||||||| ||||| | | ||||||| ||||||||||||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataagtt-ttgtgagaatatttgggagaatttatgaaaacagcttatgaca 19302566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 44822011 - 44821954
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||| ||||||||||||| |  ||||| ||||||||||||||| ||||||||||||    
T  44822011 ttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataactta 44821954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 6601426 - 6601367
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    ||||||||| |||||||||||||||||  | ||||| ||||||||| ||||| |||||||    
T  6601426 taagctattctcagcttattttcataagcactccagaatagcttataaaaacagcttata 6601367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 8094445 - 8094371
Alignment:
Q  39 cttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||||| |||||| ||||  ||||| |||||||||||||||||   | | ||||| |||||||||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaacagcttatgacat 8094371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 12110850 - 12110812
Alignment:
Q  26 ttgtttcaattgacttatttgcgcttatttactgacata 64  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  12110850 ttgtttcaattgacttatttgagcttatttaccgacata 12110812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 32410684 - 32410611
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagctta 107  Q
    |||| |||||||| |||||| || || ||||| || |||||| ||| |||||||||| |||| |||||||||||    
T  32410684 attggcttatttgagcttatctattggcataagcatttgtgaaactgttttgaataacttatgaaaacagctta 32410611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 47046034 - 47046071
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacactt 71  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  47046034 attgacttatttgtgcttatctactgacataaacactt 47046071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 47177693 - 47177624
Alignment:
Q  130 agctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||| ||| ||||||||||||||| |  |||| |||||||| ||||||| ||||||| |||| ||||||    
T  47177693 agctacttttagcttattttcataaattctccaagatagcttttgaaaacagcttatagcttatatgaaa 47177624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 22387811 - 22387867
Alignment:
Q  23 ggcttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||||||  ||||||||| | |  ||||||||||||||||||||| |||||||||    
T  22387811 ggcttgtttggattgacttactagaacttatttactgacataaacacgtgtgagact 22387867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 27548311 - 27548251
Alignment:
Q  139 cagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    |||||||| | ||||| | ||||| |||||||||||||||| ||||||| |||| ||||||    
T  27548311 cagcttatctccataagttatccaagatagcttatgaaaacagcttatagcttaaatgaaa 27548251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 43648292 - 43648240
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    |||||| |||||||||||| ||  |||| |||||||||||||||| |||||||    
T  43648292 ttttcaacttattttcatattttctccaagatagcttatgaaaacagcttata 43648240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 1017172 - 1017103
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacag 103  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||| ||| ||| || ||||| ||||||    
T  1017172 attgacttatttgagctaatctactgacataaacacttgtgagactgtttggaagaacttatagaaacag 1017103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 18512434 - 18512487
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagacta 80  Q
    |||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  18512434 tgtttcgattaacttatttgagcttatctactgacataaacacttgtgagacta 18512487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 52333749 - 52333693
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattt 83  Q
    |||||| |||| |||||||| |||||||||||||| ||| |||||||||||||||||    
T  52333749 tgtttcgattggcttatttgagcttatttactgacctaagcacttgtgagactattt 52333693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 7101969 - 7102018
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattt 83  Q
    ||||||||| ||| | |||||||| |||||||||||||||||||||||||    
T  7101969 attgacttacttgagtttatttacagacataaacacttgtgagactattt 7102018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 18628479 - 18628524
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||    
T  18628479 attgacgtatttgagcttatctactgacataaacacttgtgagact 18628524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 50298660 - 50298581
Alignment:
Q  33 aattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||| ||||||  |||||| ||||||||||| ||||||||||||| ||| ||| || |||| |||| ||||||||||||    
T  50298660 aattgatttattttagcttatctactgacataagcacttgtgagactgtttggaaaaacttat-aaaatagcttatgacat 50298581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 3175977 - 3175939
Alignment:
Q  161 caggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  3175977 caggatagcttatgaaaacagcttataacttacttgaaa 3175939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 9841116 - 9841054
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||||||||||||||| || |  |||||||||||||||||||||  |||||| |||| ||||||    
T  9841116 ttttcagcttattttcacaagt--tccaggatagcttatgaaaacatcttatagcttatatgaaa 9841054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 19429396 - 19429441
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||| |||||||| ||||||||||||  ||||||||||||||||||    
T  19429396 attggcttatttgagcttatttactggtataaacacttgtgagact 19429441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 29601026 - 29601099
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatg-aaatggtttga 207  Q
    |||||||||||||||||||| |  || |||||||| ||||||||| | ||||| ||| |||| |||||||||||    
T  29601026 ttttcagcttattttcataagttctctaggatagcatatgaaaacagattatagcttgcatgaaaatggtttga 29601099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 53138147 - 53138102
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||| |||||| |||||||||||||||||| ||| |||||||||    
T  53138147 attgacctatttgagcttatttactgacataagcacctgtgagact 53138102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 16199999 - 16200051
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    |||| ||||||||||||||| |  |||| |||||||||||||||| |||||||    
T  16199999 tttttagcttattttcataagtcctccaagatagcttatgaaaacagcttata 16200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 20031801 - 20031737
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||||||| |||||||||| |  || |  ||||||||||||||| ||||||| |||||||||||    
T  20031801 ttttcagctcattttcataagttctctaaaatagcttatgaaaactgcttatagcttacatgaaa 20031737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 30338530 - 30338586
Alignment:
Q  23 ggcttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||||||  ||||||||| |||| |||||| |||||  ||||||||||||||||||    
T  30338530 ggcttgttggaattgacttttttgagcttatctactgggataaacacttgtgagact 30338586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 39931301 - 39931345
Alignment:
Q  35 ttgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||||||||||   ||||||| ||||||||||||||||||||||    
T  39931301 ttgacttatttgaatttatttattgacataaacacttgtgagact 39931345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 55302309 - 55302249
Alignment:
Q  127 gtaagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    ||||||| |||||||||||||||||||| |  ||||  ||||||||||| ||| |||||||    
T  55302309 gtaagcttttttcagcttattttcataagttttccaacatagcttatgataacagcttata 55302249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 27028890 - 27028831
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    |||||||||||||||||||||||||||    |||| |||||||||||||||| |||||||    
T  27028890 taagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttata 27028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 1821974 - 1821884
Alignment:
Q  33 aattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacatatctataaat 123  Q
    |||||||||||||| |||||  ||| ||||||||||||||| ||||||||| ||| || |||| | |||| ||||| |||| || ||||||    
T  1821974 aattgacttatttgagcttagataccgacataaacacttgtaagactatttggaagaacttatgataacatcttataacatgtccataaat 1821884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 1856419 - 1856329
Alignment:
Q  33 aattgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacatatctataaat 123  Q
    |||||||||||||| |||||  ||| ||||||||||||||| ||||||||| ||| || |||| | |||| ||||| |||| || ||||||    
T  1856419 aattgacttatttgagcttagataccgacataaacacttgtaagactatttggaagaacttatgataacatcttataacatgtccataaat 1856329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 30251465 - 30251526
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataac 189  Q
    |||||| ||| |||||||||||||||| |  |||| |||||||||||||||| |||||||||    
T  30251465 taagctttttacagcttattttcataagtggtccaagatagcttatgaaaacagcttataac 30251526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 30947490 - 30947527
Alignment:
Q  142 cttattttcataattaatccaggatagcttatgaaaac 179  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  30947490 cttattttcataattcatccaggatagcttatgaaaac 30947527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 14926897 - 14926953
Alignment:
Q  23 ggcttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    |||||||||  |||||||||||||  ||||||||||| ||||| |||||||||||||    
T  14926897 ggcttgtttggattgacttatttgaacttatttactggcataagcacttgtgagact 14926953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 26499844 - 26499785
Alignment:
Q  50 ttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatg 109  Q
    |||| ||||||||||| ||||||||||||||||||| | |  |||| |||||||||||||    
T  26499844 ttatctactgacataagcacttgtgagactattttgtagaggttatgaaaacagcttatg 26499785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 7714386 - 7714341
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||||||||||| |||||| || || |||||||||||||||||||    
T  7714386 attgacttatttgagcttatataatgtcataaacacttgtgagact 7714341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 9700141 - 9700096
Alignment:
Q  38 acttatttgcgcttatttactgacataaacacttgtgagactattt 83  Q
    ||||||||| |||||| ||||  |||||||||||||||||||||||    
T  9700141 acttatttgagcttatctactagcataaacacttgtgagactattt 9700096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 9956832 - 9956889
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||||||||||||||||| |  |||| ||||| ||||||||||  |||||||||||    
T  9956832 ttttcagcttattttcataagttctccaagatagattatgaaaacaacttataactta 9956889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 778532 - 778488
Alignment:
Q  35 ttgacttatttgcgcttatttactgacataaacacttgtgagact 79  Q
    ||||||||||||  |||||||||||| |||| |||||||||||||    
T  778532 ttgacttatttgtacttatttactgaaataagcacttgtgagact 778488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 1117462 - 1117402
Alignment:
Q  23 ggcttgtttcaattgacttatttgcgcttatttactgacataaacacttgtgagactattt 83  Q
    |||||||||  ||||||||| |||  ||||| ||||  |||||||||||||||||||||||    
T  1117462 ggcttgtttggattgacttacttgaacttatatactagcataaacacttgtgagactattt 1117402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 1433602 - 1433550
Alignment:
Q  133 tattttcagcttattttcataattaatccaggatagcttatgaaaaccgctta 185  Q
    |||||||| |||||||||||||    ||||||||||||||||||||| |||||    
T  1433602 tattttcaacttattttcataagctctccaggatagcttatgaaaactgctta 1433550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 11415213 - 11415149
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    ||||||||| |||||||||||||| ||    || |||||||||||||||||| || |||||||||    
T  11415213 taagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataactta 11415149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 11569475 - 11569527
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    ||||||||||||||||| |||   |||| |||||||||||||||| |||||||    
T  11569475 ttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 30013273 - 30013213
Alignment:
Q  132 ctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    ||||||||||||||||| ||| | |  | ||||||||||||||||||| ||||||| ||||    
T  30013273 ctattttcagcttatttccattagttctacaggatagcttatgaaaacagcttatagctta 30013213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 43717948 - 43718012
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||| |||| |||||| |||||||| |  |||| ||||||||||| |||| ||||||||||||    
T  43717948 taagctgtttttagcttactttcataagttctccaagatagcttatgcaaacagcttataactta 43718012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 13908392 - 13908343
Alignment:
Q  26 ttgtttcaattgacttatttgcgcttatttactgacataaacacttgtga 75  Q
    |||||| ||||||||||||||  ||||| |||||||||||||||||||||    
T  13908392 ttgtttgaattgacttatttgaacttatctactgacataaacacttgtga 13908343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 34430472 - 34430533
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataac 189  Q
    |||||| |||||||||||||||||||| |  |||| ||||||||||||||||  ||||||||    
T  34430472 taagcttttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataac 34430533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 835267 - 835319
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    |||||||||||||||||||| |  |||| |||||||||||||||| |||||||    
T  835267 ttttcagcttattttcataagttctccaagatagcttatgaaaactgcttata 835319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 31624149 - 31624085
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||| |||||| |||||||||||||||  |||| |||||| ||||||||| ||||||| ||||    
T  31624149 taagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatagctta 31624085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 7351590 - 7351640
Alignment:
Q  27 tgtttcaattgacttatttgcgcttatttactgacataaacacttgtgaga 77  Q
    ||||| |||||||||||||| | |||| ||||||||||| |||||||||||    
T  7351590 tgtttaaattgacttatttgagtttatctactgacataagcacttgtgaga 7351640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 11600821 - 11600879
Alignment:
Q  55 tactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||||||||||||||||||| || ||||| | | ||| | |||||||||||||||||    
T  11600821 tactgacataaacacttgtgaggctgttttgtagagtttttgaaaacagcttatgacat 11600879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 3775080 - 3775133
Alignment:
Q  60 acataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||||||||||||||||||||  ||| |  ||||| ||||||||||||||||    
T  3775080 acataaacacttgtgagactattcggaagagcttatagaaacagcttatgacat 3775133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 32976108 - 32976043
Alignment:
Q  48 gcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    |||||||||||| |||||  |||||||||||| ||| ||| |  ||||| ||||||||||||||||    
T  32976108 gcttatttactggcataagtacttgtgagactgtttggaagagcttatagaaacagcttatgacat 32976043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 837233 - 837293
Alignment:
Q  134 attttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttaca 194  Q
    ||||||||||||||||||||| |  |||| ||||||| ||||||||  |||||| ||||||    
T  837233 attttcagcttattttcataagttctccaagatagctaatgaaaactacttatagcttaca 837293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 3180996 - 3181044
Alignment:
Q  35 ttgacttatttgcgcttatttactgacataaacacttgtgagactattt 83  Q
    ||||||||||||  ||||| ||| ||||||| |||||||||||||||||    
T  3180996 ttgacttatttgaacttatctacagacataagcacttgtgagactattt 3181044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 8010416 - 8010352
Alignment:
Q  128 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 192  Q
    |||||||||||||| ||||||  |||| |  ||||||||| ||||| ||||| ||||||||||||    
T  8010416 taagctattttcagtttatttctataagttctccaggataacttattaaaacagcttataactta 8010352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 11340566 - 11340630
Alignment:
Q  49 cttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||| ||||||||| ||||||||||||| |||     |||||||| ||||||||||||||||    
T  11340566 cttatttcctgacataagcacttgtgagactgtttgacgcaatttatataaacagcttatgacat 11340630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 31671092 - 31671156
Alignment:
Q  135 ttttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataacttacatgaaa 199  Q
    ||||||||||||||||||||   ||| ||||||| ||| |||||| ||||||| |||| ||||||    
T  31671092 ttttcagcttattttcataagctatctaggatagtttacgaaaacagcttatagcttatatgaaa 31671156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 32843211 - 32843143
Alignment:
Q  39 cttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagctta 107  Q
    |||||||| ||||||||| |||||||||||||| ||||| | ||  | ||||||||| |||| ||||||    
T  32843211 cttatttgagcttatttattgacataaacacttatgagattgttcgggataatttatgaaaatagctta 32843143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 159899 - 159986
Alignment:
Q  34 attgacttatttgcgcttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacatatctataa 121  Q
    |||| |||||||| |||||| |||| | |||||||||||||| ||||||||| | || | ||  |||||| ||||||||| |||||||    
T  159899 attggcttatttgagcttatctactaatataaacacttgtgaaactattttggagaactaatggaaacagtttatgacatgtctataa 159986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 1665 - 1729
Alignment:
Q  49 cttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||| ||||||||| ||||||||||||| |||     |||||||| ||||||||||||||||    
T  1665 cttatttcctgacataagcacttgtgagactgtttgacgcaatttatataaacagcttatgacat 1729  T

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Target: scaffold0549; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 3755 - 3819
Alignment:
Q  49 cttatttactgacataaacacttgtgagactattttgaataatttataaaaacagcttatgacat 113  Q
    ||||||| ||||||||| ||||||||||||| |||     |||||||| ||||||||||||||||    
T  3755 cttatttcctgacataagcacttgtgagactgtttgacgcaatttatataaacagcttatgacat 3819  T

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Target: scaffold0221 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 22291 - 22231
Alignment:
Q  127 gtaagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttata 187  Q
    ||||||| |||||||||||||||||||| |  ||||  ||||||||||| ||| |||||||    
T  22291 gtaagcttttttcagcttattttcataagttttccaacatagcttatgataacagcttata 22231  T

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