View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1433_high_84 (Length: 222)
Name: NF1433_high_84
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_84 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 10046894 - 10046683
Alignment:
| Q |
11 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattatttcctgcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10046894 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattctttcctgcca |
10046795 |
T |
|
| Q |
111 |
ttgttgatttaatactttggaatctcgcaaatctacttgacctagataacaaaatcagtcaatcaaattaataaaaatctataaagcattaacacgctga |
210 |
Q |
| |
|
|||||| ||||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10046794 |
ttgttgctttaatattctgtaatctcgcaaatctacttgacctgaataacaaaatcagtcaatcaaattaataaaaatctataaagcattaacacgcaga |
10046695 |
T |
|
| Q |
211 |
cactctatataa |
222 |
Q |
| |
|
||||| |||||| |
|
|
| T |
10046694 |
cactcaatataa |
10046683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 39676792 - 39676649
Alignment:
| Q |
11 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattatttcctgcca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||||||||| |||||||| | |
|
|
| T |
39676792 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaattctttcctgcta |
39676693 |
T |
|
| Q |
111 |
ttgttgatttaatactttggaatctcgcaaatctacttgaccta |
154 |
Q |
| |
|
| || | ||||||| |||| ||||| |||||||||||||||||| |
|
|
| T |
39676692 |
tagtagctttaatattttgtaatcttgcaaatctacttgaccta |
39676649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 10887120 - 10887268
Alignment:
| Q |
11 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattatttcctgcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||| |||||||||| |||||||||| |
|
|
| T |
10887120 |
agaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtataaattctttcctgcca |
10887219 |
T |
|
| Q |
111 |
ttgttgatttaatactttggaatctcgcaaatctacttgacctagataa |
159 |
Q |
| |
|
| || | ||||||||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
10887220 |
tagtagctttaatactctgtaatcttgcaaatctacttgacctaaataa |
10887268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 10867249 - 10867101
Alignment:
| Q |
11 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattatttcctgcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||| |||| ||||| |||||||||| |
|
|
| T |
10867249 |
agaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtacaaattctttcctgcca |
10867150 |
T |
|
| Q |
111 |
ttgttgatttaatactttggaatctcgcaaatctacttgacctagataa |
159 |
Q |
| |
|
| || | ||||||||| || ||||| |||||||||||||||||| |||| |
|
|
| T |
10867149 |
tagtagctttaatactctgtaatcttgcaaatctacttgacctaaataa |
10867101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 10873063 - 10873211
Alignment:
| Q |
11 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattatttcctgcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || || ||| |||||||||| ||||| |||| |
|
|
| T |
10873063 |
agaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagcca |
10873162 |
T |
|
| Q |
111 |
ttgttgatttaatactttggaatctcgcaaatctacttgacctagataa |
159 |
Q |
| |
|
| || | ||||||||| || | ||| |||||||||||||||||| |||| |
|
|
| T |
10873163 |
tagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa |
10873211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 10878134 - 10878282
Alignment:
| Q |
11 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattatttcctgcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || || ||| |||||||||| ||||| |||| |
|
|
| T |
10878134 |
agaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagcca |
10878233 |
T |
|
| Q |
111 |
ttgttgatttaatactttggaatctcgcaaatctacttgacctagataa |
159 |
Q |
| |
|
| || | ||||||||| || | ||| |||||||||||||||||| |||| |
|
|
| T |
10878234 |
tagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa |
10878282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 10883205 - 10883353
Alignment:
| Q |
11 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattatttcctgcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || || ||| |||||||||| ||||| |||| |
|
|
| T |
10883205 |
agaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagcca |
10883304 |
T |
|
| Q |
111 |
ttgttgatttaatactttggaatctcgcaaatctacttgacctagataa |
159 |
Q |
| |
|
| || | ||||||||| || | ||| |||||||||||||||||| |||| |
|
|
| T |
10883305 |
tagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa |
10883353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 30708479 - 30708537
Alignment:
| Q |
11 |
agaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcacc |
69 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
30708479 |
agaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
30708537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University