View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_88 (Length: 214)
Name: NF1433_high_88
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_88 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 24820068 - 24819881
Alignment:
| Q |
10 |
gaagaaaatcatgttgaaagtataatctagcatcacgtagaatctgacagaacctttgctctaaacacttcaaaaattatctaaaaattgcttgaaacat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24820068 |
gaagaaaatcatgttgaaagtataatctagcatcacgtagaatctgacagaacctttgctctaaacacttcaaaaattatctaaaatctgcttgaaacat |
24819969 |
T |
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| Q |
110 |
aaaaagagacagataaccaaaactcacaaaacctaattgatgattccaagattatgattagggttaaactaaagcttaacctaataag |
197 |
Q |
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| T |
24819968 |
aaaaagagacagataaccaaaactcacaaaacctaattgatgattccaagattatgattagggttaaactaaagcttaacctaataag |
24819881 |
T |
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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 37686278 - 37686377
Alignment:
| Q |
21 |
tgttgaaagtataatctagcatcacgtagaatctgacagaacctttgctctaaacacttcaaaaattatctaaaaattgcttgaaacataaaaagagaca |
120 |
Q |
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| T |
37686278 |
tgttgaaagtaaaatctagcatcatgtagaatctgacaaaacctttgctctaaacacttcaaaaatcatctaaaaactgcttgaaacataaaaagagaca |
37686377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 46330289 - 46330253
Alignment:
| Q |
161 |
ttatgattagggttaaactaaagcttaacctaataag |
197 |
Q |
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| T |
46330289 |
ttatgattagggttaagcaaaagcttaacctaataag |
46330253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 7497460 - 7497364
Alignment:
| Q |
21 |
tgttgaaagtataatctagcatcacgtagaatctgacagaacctttgctctaaacacttcaaaaattatctaaaaattgcttgaaacataaaaagagaca |
120 |
Q |
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||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
7497460 |
tgttgaaagtaaagtctagcatcacgtagaat---acaaaacctttgctctaaacacttcaaaaatcgtctaaaaactgcttgaaacataaaaagagaca |
7497364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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