View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_high_9 (Length: 519)
Name: NF1433_high_9
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 27762174 - 27761773
Alignment:
| Q |
1 |
ttcaaagatgtacagatggatggataaaggtatttattgcaatttattaaggtctttattgcaatttattattctcaattataaaatataataggnnnnn |
100 |
Q |
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| T |
27762174 |
ttcaaagatgtacagatggata---aaaggtatttattgcaatttattaaggtctttattgcaatttattattctcaattataaaatgtaatagactttt |
27762078 |
T |
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| Q |
101 |
nnnat--aacagcagatattattacattgaatgagtgcaagacgcatcaaaacatttgcgaaagccaaagaccaaaaacata-aaggtgttatatatatg |
197 |
Q |
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| T |
27762077 |
ttttttaaacagcagatattattacattgaatgagtgcacgacgcatcaaaacatttgcaaaagccaaagaccaaaa-catagaaggtgttatgtatatg |
27761979 |
T |
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| Q |
198 |
cggcacatctgatacaacccaacaaaaaccaccccaactcctccaagctaaaacagcgacaaagccacacagcaagaagccaaaccaaaggaaaggagcc |
297 |
Q |
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| T |
27761978 |
cggcacatatgatacaacccaacaaaaatcaccccaact-------------------acaaagccgcacagcaagaagccaaaccaaaggaaaggagcc |
27761898 |
T |
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| Q |
298 |
tgatgttgaaggtatacgagggcgaaagtccaaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcgaatacatctacatcaacgcca |
397 |
Q |
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| T |
27761897 |
tgatgctgaaggtatacgagggcgaaagaccaaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcaaatacatctacatcaacacca |
27761798 |
T |
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| Q |
398 |
gctaggatacaagggaaaggagcct |
422 |
Q |
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| T |
27761797 |
gctaggatacaagggaaaggagcct |
27761773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 427 - 519
Target Start/End: Complemental strand, 27756841 - 27756749
Alignment:
| Q |
427 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaagaacgaagaaaatctgcacaactgagttcttt |
519 |
Q |
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| T |
27756841 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaagaacgaagaaaatctgcacaactgagttcttt |
27756749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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