View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_10 (Length: 506)
Name: NF1433_low_10
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 36932411 - 36932584
Alignment:
| Q |
11 |
cagagaacgaaaatcaaagaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtgaagggtttggccaaggccgagc |
110 |
Q |
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| T |
36932411 |
cagagaacgaaaatcaaagaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtcaagggtttggccaaggccgagc |
36932510 |
T |
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| Q |
111 |
ccgtttggctcaaagccatggaacagttaatctcctgatctttcatgtttgaacttattttctcatacaatgtc |
184 |
Q |
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| T |
36932511 |
ccgtttggctcaaagccatggaacagttaatctcctgatctttcatgtttgaacttattttctcttacaatgtc |
36932584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 341 - 487
Target Start/End: Original strand, 36932734 - 36932880
Alignment:
| Q |
341 |
tatcacacttaggattatggtgccagagacgttatttttcccagtcttggactatgctatactttttagtttatttatttaggaattctttggatgtcat |
440 |
Q |
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| T |
36932734 |
tatcacacttaggattatggtgctagagacgttatttttcccagtcttgaactatgctatactttttagtttatttatttaggaattctttggatgtcat |
36932833 |
T |
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| Q |
441 |
gtgtttgctgctgaattttttatacgaatatttatttaagaactgtt |
487 |
Q |
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| T |
36932834 |
gtgtttgctgctgaattttttatacgaatatttatttaagaactgtt |
36932880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 36932598 - 36932661
Alignment:
| Q |
218 |
gtgccacttgagaatctcctatctagatttttatcgttgatgactctttttgctgcacaatggt |
281 |
Q |
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| T |
36932598 |
gtgccacttgagaatctcctatctagatttttatctttgatgactctttttgttgcacaatggt |
36932661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 990311 - 990422
Alignment:
| Q |
28 |
agaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtgaagggtttggccaaggccgagcccgtttggctcaaagcc |
127 |
Q |
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| T |
990311 |
agaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtcaagggtttggccatggccgaacctgtttggctcaaagcc |
990410 |
T |
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| Q |
128 |
atggaacagtta |
139 |
Q |
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| T |
990411 |
atggaacagtta |
990422 |
T |
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