View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1433_low_11 (Length: 496)
Name: NF1433_low_11
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_11 |
 |  |
|
Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Complemental strand, 43613776 - 43613318
Alignment:
| Q |
16 |
atggtcttacaccatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
43613776 |
atggtcttacaccatgtataagtatcttttttatcatcagatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatc-aacagtg |
43613678 |
T |
 |
| Q |
116 |
aaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaattagcctgaattagattcaaaccaaattctaaaagaatttttgcatgtg |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43613677 |
aaaactagtttgtgtttgatgcaagacttgtctcacttgtgcactatagaattggc---aattagattcaaaccaaattctaaaagaatttttgcatgtg |
43613581 |
T |
 |
| Q |
216 |
ctggttaccgaatctgcctcttctttggcctttctagttgtctgtcttcatcagtgtcttcctctatttcacataccctcgcatggctgcaaccgatcac |
315 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43613580 |
ttggttaccgaatttgcctcctctttggcctttctagttgtctgtcttcatcagtgtcttcctctatttcacataccctcgcatgcctgcaaccgatcac |
43613481 |
T |
 |
| Q |
316 |
atgaaacagtcacatgttctcagttgaaaaatatcctaaagtttagctttcatactgtccatgatttnnnnnnnnnnnnnnnnnnnnggtcaccatgctt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43613480 |
atgaaacagtcacatgttctcagttgaaaaatatcctaaagtttagctttcatactgtccatgatttaaaaaatgaaagaaaaaaaaggtcaccatgctt |
43613381 |
T |
 |
| Q |
416 |
catttttcagaaaggaatcagcaatacatcagtggcaaatttaagtgtatttaacatatggac |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43613380 |
catttttcagaaaggaatcagcaatacatcagtggcaaatttaagtgtatttaacatatggac |
43613318 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 56127427 - 56127364
Alignment:
| Q |
102 |
ttgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactataga |
165 |
Q |
| |
|
|||| ||||| |||||||| |||||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
56127427 |
ttgaaccaatggtgaaaacaagtttgtgcatggtgcaagacttgtctcacttgtgcaccataga |
56127364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 8482432 - 8482361
Alignment:
| Q |
55 |
gatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagttt |
126 |
Q |
| |
|
|||||| ||||||| ||| | |||||||||| |||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
8482432 |
gatcaaaaagtcatgtcatatttcatttaatttaatggtgaaatttattgaaccaatggtgaaaactagttt |
8482361 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 30020897 - 30020938
Alignment:
| Q |
79 |
atttaattaaatggttgaatttattgatccaatagtgaaaac |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
30020897 |
atttaatttaatggttgaatttattgatttaatagtgaaaac |
30020938 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 34018195 - 34018339
Alignment:
| Q |
24 |
acaccatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactag |
123 |
Q |
| |
|
|||||||| | ||||| |||||| | ||||||||||| |||||| |||| |||||||||||| |||||| ||||||||||||||||| || |||||||| |
|
|
| T |
34018195 |
acaccatgcacaagtaactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatccaatggtaaaaactag |
34018294 |
T |
 |
| Q |
124 |
tttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
34018295 |
cttgtgcatgatgcaagacttgtctcacttatgcaccttagaatt |
34018339 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 39785689 - 39785588
Alignment:
| Q |
57 |
tcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtg |
156 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||| || | ||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
39785689 |
tcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtg |
39785590 |
T |
 |
| Q |
157 |
ca |
158 |
Q |
| |
|
|| |
|
|
| T |
39785589 |
ca |
39785588 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 6863115 - 6863024
Alignment:
| Q |
77 |
tcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
6863115 |
tcatttaatttaatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaagacttgtctcacttatgcaccagagaatt |
6863024 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 5654685 - 5654786
Alignment:
| Q |
54 |
ggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcactt |
153 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| || ||||||||| ||| | | ||||||| | |||| ||| |||| |||||||||||||| || |
|
|
| T |
5654685 |
ggatcaataagtcatatcatatctcatttaatttaatagtggaatttatttatcaagtggtgaaaatttgtttctgtatgatacaagacttgtctcattt |
5654784 |
T |
 |
| Q |
154 |
gt |
155 |
Q |
| |
|
|| |
|
|
| T |
5654785 |
gt |
5654786 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 33155551 - 33155703
Alignment:
| Q |
16 |
atggtcttacaccatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtg |
115 |
Q |
| |
|
|||||| | ||||||| | |||| |||||| | ||||||||||| |||||| |||| |||||||||||| |||||| | ||||||||||||||| ||| |
|
|
| T |
33155551 |
atggtcctgcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtgggatttattgatccaatggtg |
33155650 |
T |
 |
| Q |
116 |
aaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33155651 |
aaaactagcttgtgcatgatgcaagacttgtctcacttgtgcaccttagaatt |
33155703 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 3769908 - 3769975
Alignment:
| Q |
101 |
attgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
|||| |||||| |||||||||| ||||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
3769908 |
attggtccaatggtgaaaactaacttgtgcatgatgcaagacttgtttcacttgtgcaccatagaatt |
3769975 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 1995196 - 1995111
Alignment:
| Q |
56 |
atcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaaga |
141 |
Q |
| |
|
|||||||| |||||||| | |||| ||||| ||| || ||||||| |||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
1995196 |
atcaataaatcatatcatatttcatataatttaattgtaaaatttatcgatctaatagtgaaaactagtttgtgtatgatgtaaga |
1995111 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 31661043 - 31661132
Alignment:
| Q |
35 |
aagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagt |
124 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||| | |||||||||||| ||| ||| ||||||||| || |||| |||||||||| |
|
|
| T |
31661043 |
aagtatctttttcatcagtggatcaataaatcatattatatctcatttaatttaatagttaaatttattgttcaaataacgaaaactagt |
31661132 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 7890476 - 7890383
Alignment:
| Q |
55 |
gatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtct |
148 |
Q |
| |
|
|||||||| |||| |||| | |||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
7890476 |
gatcaatacgtcacatcatatttcatttaatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcatgatgcaatacttgtct |
7890383 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 39742650 - 39742508
Alignment:
| Q |
26 |
accatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtt |
125 |
Q |
| |
|
|||||| |||| ||||||| ||||| | |||||||||||||| ||| | |||||||||| |||||| | ||||||||||| || || |||||||||| |
|
|
| T |
39742650 |
accatgcataaatatctttcttatcgttagatcaataagtcatgtcatatttcatttaatttaatggtgggatttattgatctaagggtaaaaactagtt |
39742551 |
T |
 |
| Q |
126 |
tgtgtctgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
||| ||||||| | |||||||||||| ||| |||||||| |
|
|
| T |
39742550 |
tgtacatgatgcagggtttgtctcacttgggcatcatagaatt |
39742508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 7890317 - 7890265
Alignment:
| Q |
96 |
aatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtct |
148 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
7890317 |
aatttattgattcaagggtgaaaattagtttgtgcatgatgcaagacttgtct |
7890265 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 27925336 - 27925420
Alignment:
| Q |
38 |
tatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaacta |
122 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||| |||||||| ||| ||| | |||||||||||||||| ||| |||||| |
|
|
| T |
27925336 |
tatcttttttatcattagatcaataaatcacatcatatctcattttatttaatcatgaaatttattgatccaatggtggaaacta |
27925420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 49920395 - 49920315
Alignment:
| Q |
42 |
ttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaacta |
122 |
Q |
| |
|
||||||||||| |||||||||| | | |||| |||||||| ||| |||||| ||||||||||||||| ||| |||||| |
|
|
| T |
49920395 |
ttttttatcattggatcaataaattacatcatatctcatttgatttaatggtgtgatttattgatccaattgtggaaacta |
49920315 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 38318137 - 38318051
Alignment:
| Q |
75 |
tctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcacta |
161 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||||||| ||| ||| | | ||||||||||||||| ||| |||||||||| |
|
|
| T |
38318137 |
tctcatttaatttaatggtaaaatttattgatcaaatagtgaaagctaatttatatatgatgcaagacttgtttcatttgtgcacta |
38318051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 11016496 - 11016586
Alignment:
| Q |
88 |
aatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaattagcctgaatt |
178 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||| ||||| ||||||| |||||||| ||||||| | ||||||| |||| |
|
|
| T |
11016496 |
aatggttgaatttattgatccaaccctaaaaactattttgtgcacgatgcctgacttgtttcacttgtacactataaagttagcctcaatt |
11016586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 49995011 - 49995102
Alignment:
| Q |
77 |
tcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
|||||||||| |||||| |||||||| ||| ||| ||||||| |||||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
49995011 |
tcatttaatttaatggtggaatttatcgatgtaatgtcaaaaactaatttgtgcatgatgcaagacttgtctcacttgtgcacaataaaatt |
49995102 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 4221687 - 4221643
Alignment:
| Q |
97 |
atttattgatccaatagtgaaaactagtttgtgtctgatgcaaga |
141 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
4221687 |
atttattgatccaatagtgaaaattagtttgtgcgtgatgcaaga |
4221643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 42347447 - 42347312
Alignment:
| Q |
16 |
atggtcttacaccatgtataagtatcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtg |
115 |
Q |
| |
|
|||||||| ||||||| |||||| || |||| | ||| |||| |||||||| |||| |||||| ||||| |||| | |||||||||||||||| | |
|
|
| T |
42347447 |
atggtcttgcaccatgaataagtgtccttttcaccattggattaataagtcgcatcatatctcatataatttaatgatgagatttattgatccaataata |
42347348 |
T |
 |
| Q |
116 |
aaaactagtttgtgtctgatgcaagacttgtctcact |
152 |
Q |
| |
|
|||||||| ||||| | ||||||||||||| ||||| |
|
|
| T |
42347347 |
aaaactagcttgtg-catatgcaagacttgtttcact |
42347312 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 23141939 - 23141896
Alignment:
| Q |
79 |
atttaattaaatggttgaatttattgatccaatagtgaaaacta |
122 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
23141939 |
atttaatttaatggtcaaatttattgatccaatagtgaaaacta |
23141896 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 40386352 - 40386281
Alignment:
| Q |
97 |
atttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
||||||||||||||| ||| ||||| | ||||| |||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
40386352 |
atttattgatccaatggtggaaactggcttgtgcatgatgcaaaacttgttacacttgtgcaccatagaatt |
40386281 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 22404211 - 22404113
Alignment:
| Q |
22 |
ttacaccatgtataagtatcttttt-tatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaa |
119 |
Q |
| |
|
|||||||||||| |||||||||||| || ||| |||||||||| ||||||| ||| |||||||| ||| || | |||||||||| ||| ||||||| |
|
|
| T |
22404211 |
ttacaccatgtacaagtatctttttctaacatttgatcaataagccatatcatgtcatatttaatttaatagtggggtttattgatcaaattgtgaaaa |
22404113 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 33125998 - 33126106
Alignment:
| Q |
40 |
tcttttttatcatcggatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaa |
139 |
Q |
| |
|
||||||| ||||| ||||||||||||| || ||||| |||||| |||||| | ||||||||||| | ||||||||| ||||||| || ||||| |
|
|
| T |
33125998 |
tctttttcatcattagatcaataagtcacattttatctcagttaatttaatggtgaactttattgatccgacgatgaaaactaatttgtgtatggtgcaa |
33126097 |
T |
 |
| Q |
140 |
gacttgtct |
148 |
Q |
| |
|
||||||||| |
|
|
| T |
33126098 |
gacttgtct |
33126106 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 35052494 - 35052458
Alignment:
| Q |
132 |
tgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |
|
|
| T |
35052494 |
tgatgcaaaatttgtctcacttgtgcactatagaatt |
35052458 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 39611731 - 39611803
Alignment:
| Q |
96 |
aatttattgatccaatagtgaaaactagtttgtgtctgatgcaagacttgtctcacttgtgcactatagaatt |
168 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||| | | |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
39611731 |
aatttattgatccaatggtgcaaaatagtttattcattatgcaagacttgcctcacttgtgcaccatagaatt |
39611803 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 11457674 - 11457563
Alignment:
| Q |
55 |
gatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgatccaatagtgaaaactagtttgtgtctgatgcaag--acttgtctcact |
152 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||| |||||| ||||||||| ||| |||| | ||||| ||||| |||||||| |||||||||| | |
|
|
| T |
11457674 |
gatcaaaaagtcacatcacttctcatttaatttaatggtggaatttattcatcaaatatttaaaac----ttgtgcacgatgcaagaaacttgtctcatt |
11457579 |
T |
 |
| Q |
153 |
tgtgcactatagaatt |
168 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
11457578 |
tgtgcaccatagaatt |
11457563 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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