View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_13 (Length: 430)
Name: NF1433_low_13
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 45628372 - 45627969
Alignment:
| Q |
19 |
tgaacaactattattactggataatagagattgacgcatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaacac |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45628372 |
tgaacaactattattactggagaatagagattaacacatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaacac |
45628273 |
T |
|
| Q |
119 |
ctttcacaacagctttaaagggcaccaaattcttcttttcttcgttttaaggtacaaactcaacagcccctgatagccccttgaaatatttatgaactat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45628272 |
ctttcacaacagctttaaagggcaccaaattcttcttttcttcattttaaggtacaaactcaacaacccctgatagccccttgaaatatttatgaactat |
45628173 |
T |
|
| Q |
219 |
gtatgcagcataataataccagcattcacatatctgcattatttcaattgtcatgtatctgaatgtacaacaaaagaagaatttctcagtacagacacat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
45628172 |
gtatgcagcataataataccagcattcacatatctccattatttcaattgtcatgtatctgaatgtacaacaaaagcataatttctcagtacagacacat |
45628073 |
T |
|
| Q |
319 |
tatttatttcacatttatactcaaattctcaattcttatcattgaggcttactcaccaggttgtgcttgagcttaatttttctgtccccttttgaacctt |
418 |
Q |
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| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45628072 |
tttttgtttcacatttatactcaaattctcaattcttgtcattgaggcttactcaccaggttgtgcttgagcttaatttttctgtccccttttgaacctt |
45627973 |
T |
|
| Q |
419 |
tgct |
422 |
Q |
| |
|
|||| |
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|
| T |
45627972 |
tgct |
45627969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 30784525 - 30784124
Alignment:
| Q |
19 |
tgaacaactattattactggataatagagattgacgcatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaacac |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
30784525 |
tgaacaactattattactggagaatagagattaacgcatgtataatgagttaccaagatgagtgcagcaattgcctgaacaagccgatgaagcaaaacac |
30784426 |
T |
|
| Q |
119 |
ctttcacaacagctttaaagggcaccaaattcttcttttcttcgttttaaggtacaaactcaacagcccctgatagccccttgaaatatttatgaactat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30784425 |
ctttcacaacagctttaaagggcaccaaattcttcttttcttcattttaaggtacaaaatcaacagcccctgatagccccttgaaatatttatgaactat |
30784326 |
T |
|
| Q |
219 |
gtatgcagcataataataccagcattcacatatctgcattatttcaattgtcatgtatctgaatgtacaacaaaagaagaatttctcagtacagacacat |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |
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|
| T |
30784325 |
gtatgcagcataataatatcagcattcacatatctgcattatttcaattgtcatgtatctgaatctacaacaaaagcagaatttctgagtacagacacat |
30784226 |
T |
|
| Q |
319 |
tatttatttcacatttatactcaaattctcaattcttatcattgaggcttactcaccaggttgtgcttgagcttaatttttctgtccccttttgaacctt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30784225 |
tatttatttcacatttatactcaaattctcaattcttgtcattgaggcatactcaccaggttgtgcttgagcttaatttttctgtccccttttgaacctt |
30784126 |
T |
|
| Q |
419 |
tg |
420 |
Q |
| |
|
|| |
|
|
| T |
30784125 |
tg |
30784124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 197 - 421
Target Start/End: Complemental strand, 36322106 - 36321882
Alignment:
| Q |
197 |
ccttgaaatatttatgaactatgtatgcagcataataataccagcattcacatatctgcattatttcaattgtcatgtatctgaatgtacaacaaaagaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||| ||||||||||||||| | |
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|
| T |
36322106 |
ccttgaaatatttatgaactatgtatgcagcataataatatcggcattcacatgaatgcattattttaattgtcatgtatctaaatgtacaacaaaagca |
36322007 |
T |
|
| Q |
297 |
gaatttctcagtacagacacattatttatttcacatttatactcaaattctcaattcttatcattgaggcttactcaccaggttgtgcttgagcttaatt |
396 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||| |
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|
| T |
36322006 |
gaatttctgagtacagacacattatttatttcacatttatactcaaattctcaattcttgtcattgatgcttattcaccaggttgtgcttgagcttgatt |
36321907 |
T |
|
| Q |
397 |
tttctgtccccttttgaacctttgc |
421 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
36321906 |
tttctgtccccttttgaacctttgc |
36321882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 199 - 386
Target Start/End: Complemental strand, 36306717 - 36306529
Alignment:
| Q |
199 |
ttgaaatatttatgaactatgtatgcagcataataataccagcattcacatatctgcattatttcaattgtc-atgtatctgaatgtacaacaaaagaag |
297 |
Q |
| |
|
||||||||||||| | ||||||||||| | ||||||| ||| |||||||| |||| ||| |||||| |||| || ||||| ||||||||||||||| | |
|
|
| T |
36306717 |
ttgaaatatttattagctatgtatgcaatagaataatagcagaattcacatgtctgtattttttcaactgtccatatatctaaatgtacaacaaaagcaa |
36306618 |
T |
|
| Q |
298 |
aatttctcagtacagacacattatttatttcacatttatactcaaattctcaattcttatcattgaggcttactcaccaggttgtgctt |
386 |
Q |
| |
|
||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
36306617 |
aatttctgagtacaaacactttatttacttcacatttatactcaaattctcaattcttgtcattgaggcttattcaccaggttgtgctt |
36306529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 43898105 - 43897963
Alignment:
| Q |
19 |
tgaacaactattattactggataatagagattgacgcatgtataatgagttaccaagatgagtgtagcaattgcctgaacaagctgatgaagcaaaacac |
118 |
Q |
| |
|
||||||||||| |||||||| |||||||||| || |||| ||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||| |
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|
| T |
43898105 |
tgaacaactatagttactggagaatagagattaacatgtgtagaatgacttaccaagatgagtgcaacaattgcctgaacaagctgctgaagcaaaacac |
43898006 |
T |
|
| Q |
119 |
ctttcacaacagctttaaagggcaccaaattcttcttttcttc |
161 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
43898005 |
ctttcacaactgctttaaagggtaccaaattcttcttttcttc |
43897963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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