View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_14 (Length: 430)
Name: NF1433_low_14
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 41227826 - 41227424
Alignment:
| Q |
12 |
aaggtgaattttactagtacatatatatgtccaacatataattaataagtacgcgagtttggaccaaatacatttacctttttgtttatatttaaaacca |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41227826 |
aaggtgaattttactagtacatatatatgtccaacatataattaataagtacgcgagtttggaccaaatacatttacctttttgtttatatttaagacca |
41227727 |
T |
|
| Q |
112 |
gaggaaatataatttgtcttccctgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacgggaagaaaaggagaagtatatatggcttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41227726 |
gaggaaatataatttgtcttccctgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacaggaagaaaaggagaagtatatatggcttt |
41227627 |
T |
|
| Q |
212 |
cttcaatctaaatgaacagaagacaccaatatatgcaaatatgtcatatttggcgaaggttttacctggcagacgcatcaattcctgtcaaggcaaagaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41227626 |
cttcaatctaaatgaacagaagacaccaatatatgcaaatatgtcatatttggcgaaggttttacctggcagacgcatcaattcctgtcaaggcaaagaa |
41227527 |
T |
|
| Q |
312 |
gtgtggagtgggaagaacgttgtaacaacgcaagggacaatatcaatggacgtggaagttcatggatgcgcgctagttgttctatattgcaactagacaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41227526 |
gtgtggagtgggaagaacgttgtaacaacgcaagggacaatatcaatggacgtggaagttcatggatgcgcgctagttgttctatattgcaactagacaa |
41227427 |
T |
|
| Q |
412 |
tat |
414 |
Q |
| |
|
||| |
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|
| T |
41227426 |
tat |
41227424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 9e-74; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 135 - 403
Target Start/End: Original strand, 37377742 - 37378010
Alignment:
| Q |
135 |
tgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacgggaagaaaaggagaagtatatatggctttcttcaatctaaatgaacagaaga |
234 |
Q |
| |
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|||||||| ||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
37377742 |
tgtgcagcaaatgtagtatcgggtgggattcgctcttggattgcaacggggagaaacggagaagtgtatttggctttcttcaatctaaatgaacagaaga |
37377841 |
T |
|
| Q |
235 |
caccaatatatgcaaatatgtcatatttggcgaaggttttacctggcagacgcatcaattcctgtcaaggcaaagaagtgtggagtgggaagaacgttgt |
334 |
Q |
| |
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||||| |||| ||||| | ||| ||||||| |||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||| |
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| T |
37377842 |
caccagtatacgcaaagacatcagatttggctaaggttttccctggcagaccaatcaatttctgtcaaggtaaagaagtgtggagtggaaagaacgttgc |
37377941 |
T |
|
| Q |
335 |
aacaacgcaagggacaatatcaatggacgtggaagttcatggatgcgcgctagttgttctatattgcaa |
403 |
Q |
| |
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||||||||||||||| |||| ||||| |||||||||||||||| | ||| |||||||| ||||||| |
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| T |
37377942 |
aacaacgcaagggacgatattcatggatttggaagttcatggatgttcactatttgttctacattgcaa |
37378010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 135 - 407
Target Start/End: Original strand, 37385154 - 37385426
Alignment:
| Q |
135 |
tgtgcagctaatgttgaatcgggtggcattcgctcttggattgcaacgggaagaaaaggagaagtatatatggctttcttcaatctaaatgaacagaaga |
234 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||| ||| | |||||||||||||||||||||||||||| |
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| T |
37385154 |
tgtgcagcaaatgttgtttcgggtgggattcgttcttggattgcaacggggagaaacggagaagtgtatttagctttcttcaatctaaatgaacagaaga |
37385253 |
T |
|
| Q |
235 |
caccaatatatgcaaatatgtcatatttggcgaaggttttacctggcagacgcatcaattcctgtcaaggcaaagaagtgtggagtgggaagaacgttgt |
334 |
Q |
| |
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||||| |||||||||| | ||| |||||| |||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| || |
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| T |
37385254 |
caccagtatatgcaaagacatcagatttgggtaaggttttccctggcagacgcatcaagtcctgtcaaggtacagaagtgtggagtggaaagaacgtcgt |
37385353 |
T |
|
| Q |
335 |
aacaacgcaagggacaatatcaatggacgtggaagttcatggatgcgcgctagttgttctatattgcaactag |
407 |
Q |
| |
|
|||||| |||||||| ||||| | || ||||||||||||||||| || ||| |||||||| ||||||||||| |
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|
| T |
37385354 |
aacaactcaagggacgatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactag |
37385426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 145 - 376
Target Start/End: Complemental strand, 37408588 - 37408349
Alignment:
| Q |
145 |
atgttgaatcgggtggcattcgctcttggattgcaacgggaagaaaaggagaagtatatatggctttcttcaatctaaatgaacagaagacaccaatata |
244 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
37408588 |
atgttgattcggatggcattcgctcttggattgcaacgggaagaaaaggagaagtgtatttggctttcttcaatctaaatgaacagaagacaccagtata |
37408489 |
T |
|
| Q |
245 |
tgcaaatatgtcatatttggcgaaggttttacctggcagacgcatcaattcctgtcaaggcaaagaagtgtggagtg--------ggaagaacgttgtaa |
336 |
Q |
| |
|
|||||| | ||| |||| || |||||||| ||||||| || ||||| |||||||||||| |||||||||||||||| | |||||||| | || |
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|
| T |
37408488 |
tgcaaagacatcagatttagctaaggttttccctggcatacacatcagttcctgtcaaggtaaagaagtgtggagtggatcagtagaaagaacgtcgcaa |
37408389 |
T |
|
| Q |
337 |
caacgcaagggacaatatcaatggacgtggaagttcatgg |
376 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||| |
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| T |
37408388 |
caacgcaaggaatgatatcagtggacgtggaagttcatgg |
37408349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 166 - 403
Target Start/End: Original strand, 37362019 - 37362256
Alignment:
| Q |
166 |
gctcttggattgcaacgggaagaaaaggagaagtatatatggctttcttcaatctaaatgaacagaagacaccaatatatgcaaatatgtcatatttggc |
265 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||| ||| ||| ||||| | |
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|
| T |
37362019 |
gctcttggattgcgacgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtc |
37362118 |
T |
|
| Q |
266 |
gaaggttttacctggcagacgcatcaattcctgtcaaggcaaagaagtgtggagtgggaagaacgttgtaacaacgcaagggacaatatcaatggacgtg |
365 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||||| |||| | ||| | |||||||| ||| | |||| ||||| | |||| ||||||||| ||||||| |
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|
| T |
37362119 |
taaggcttttactggcaaacgcatccgttcctgtaaaggtcaggaattatggagtggaaagtatgttgcaacaaagaaaggttcaatatcaacggacgtg |
37362218 |
T |
|
| Q |
366 |
gaagttcatggatgcgcgctagttgttctatattgcaa |
403 |
Q |
| |
|
| ||||||||||| || ||| |||||||| ||||||| |
|
|
| T |
37362219 |
ggtgttcatggatgtgcactatttgttctaaattgcaa |
37362256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 166 - 403
Target Start/End: Complemental strand, 37366042 - 37365805
Alignment:
| Q |
166 |
gctcttggattgcaacgggaagaaaaggagaagtatatatggctttcttcaatctaaatgaacagaagacaccaatatatgcaaatatgtcatatttggc |
265 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||| ||| ||| ||||| | |
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|
| T |
37366042 |
gctcttggattgcgacgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcaaatttgtc |
37365943 |
T |
|
| Q |
266 |
gaaggttttacctggcagacgcatcaattcctgtcaaggcaaagaagtgtggagtgggaagaacgttgtaacaacgcaagggacaatatcaatggacgtg |
365 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||||| |||| | ||| | |||||||| ||| | |||| ||||| | |||| ||||||||| ||||||| |
|
|
| T |
37365942 |
taaggcttttactggcaaacgcatccgttcctgtaaaggtcaggaattatggagtggaaagtatgttgcaacaaagaaaggttcaatatcaacggacgtg |
37365843 |
T |
|
| Q |
366 |
gaagttcatggatgcgcgctagttgttctatattgcaa |
403 |
Q |
| |
|
| ||||||||||| || ||| |||||||| ||||||| |
|
|
| T |
37365842 |
ggtgttcatggatgtgcactatttgttctaaattgcaa |
37365805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 5905175 - 5905207
Alignment:
| Q |
90 |
tttttgtttatatttaaaaccagaggaaatata |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
5905175 |
tttttgtttatatttaaaactagaggaaatata |
5905207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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