View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_15 (Length: 417)
Name: NF1433_low_15
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 6916314 - 6916692
Alignment:
| Q |
20 |
cagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtg |
119 |
Q |
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| T |
6916314 |
cagaccagttatattagaacctgttatgct----gaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtg |
6916409 |
T |
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| Q |
120 |
attgttggcaatgatcaggatgaagatgattctgtcataacagctcatgtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacac |
219 |
Q |
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| T |
6916410 |
attgttggcaatgttcaggacgaagattattctgtcattacagctcatgtgcctcttaacaatatgtttgggtattctacggctattcgttcgatgacac |
6916509 |
T |
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| Q |
220 |
agggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcagc |
319 |
Q |
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| T |
6916510 |
agggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcagc |
6916609 |
T |
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| Q |
320 |
tgaatgatatggcctttcaagtacacggtcctaaatttattgggggtagttatctagaaaaaagaattgtagttttggttcat |
402 |
Q |
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| T |
6916610 |
tgaatgatatggcctttcaagtacacggtcctaaattttttgggggtagttatctggaaaaaagaattgtggttttggttcat |
6916692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
219 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
318 |
Q |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
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| Q |
319 |
ctgaatgat |
327 |
Q |
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| T |
15035949 |
ctgaatgat |
15035941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 15037912 - 15037825
Alignment:
| Q |
20 |
cagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaag |
107 |
Q |
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| T |
15037912 |
cagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaacaag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
168 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
222 |
Q |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
107 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
169 |
Q |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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