View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_16 (Length: 414)
Name: NF1433_low_16
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 139 - 389
Target Start/End: Complemental strand, 8837800 - 8837550
Alignment:
| Q |
139 |
aaaagtatatacataataactttagaaattgtaccnnnnnnntaattatattacaaatgcttgaatataatatcataattgccgctcatatgtcaaaaag |
238 |
Q |
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| T |
8837800 |
aaaagtatatacataataactttagaaattgtaccaaaaaaataattatattacaaatgcttgaatataatatcataattgcatctcatatgttaaaaag |
8837701 |
T |
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| Q |
239 |
ttgcaagtatatttgagttttgaaatgtatgcacccacaatgttcttcttcttctcacttagattgtagatttctttattacactatttgaaacaaaaat |
338 |
Q |
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| T |
8837700 |
ttgcaaggatatttgagttttgaaatgtatacacccacaatgttcttcttcttctcacttagattgtagatttctttattacactatttgaaacaaaaat |
8837601 |
T |
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| Q |
339 |
tcttagatgtggtttattcttccatgttttgtaagagtgattttcaaaagg |
389 |
Q |
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| T |
8837600 |
tcttagatgtggtttattcttccatgttttgtaagagtgattttcaaaagg |
8837550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 8838077 - 8837909
Alignment:
| Q |
7 |
agtccgaaatatcccaacgtggttgacatctaaaatccttaaacagtatctttaggataatcattaacattttccgttaaaaaagagtaaaatatacata |
106 |
Q |
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| T |
8838077 |
agtccgaaatatcccaacgtggttgatatctaaagtctttaaatagtatctttaggataatcattaacattttccgttaaaaaagagtaaaatatacata |
8837978 |
T |
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| Q |
107 |
catgagtgt----gtgtccaccaacaaaaacagaggaaaagtatatacataataactttagaaattgta |
171 |
Q |
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| T |
8837977 |
catgagtgtgtgtgtgtccaccaacaaaaacagaggaaaagtatatacataataactttagaaattgta |
8837909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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