View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_17 (Length: 401)
Name: NF1433_low_17
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 38921491 - 38921128
Alignment:
| Q |
19 |
catcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccnnnnnnnngcatatgttctttatacaaaccaaaaacgagt |
118 |
Q |
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| T |
38921491 |
catcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccaaaaaaa-gcatatgttctttatacaaaccaacaacgagt |
38921393 |
T |
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| Q |
119 |
gaagaataacatataaaaacaaggtttaaattcatttcataacacactaaatcggatatcaatattatcattgttgatgtttgttctaataatgatctat |
218 |
Q |
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| T |
38921392 |
gaagaataacatataaaaacaaggtttaaattcatttcttaacacactaaatcggatatcaatattatcattttttatgtttgttctaataatgatctat |
38921293 |
T |
|
| Q |
219 |
ctaaccaaaaccaccacacaatacacaaatgaatgaatttatacgtatagacatgaagaacctaaccatgaaatgctgcaacattttagacccaaactag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38921292 |
ctaaccaaaaccaccacacaatacacaaatgaatgaatttatacgtatagacatgaagaacctaaccatgaaatgctgcaacattttagacccaaactag |
38921193 |
T |
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| Q |
319 |
attgaacaatatcatatacgcattcatgtacaggtctacatgttaaactaggctacccaatgaat |
383 |
Q |
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| T |
38921192 |
attgaacaatatcatatacgcattcatgtacaggtctacatgttaaactaggctacccaatgaat |
38921128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 226 - 383
Target Start/End: Complemental strand, 10545345 - 10545189
Alignment:
| Q |
226 |
aaaccaccacacaatacacaaatgaatgaatttatacgtataga-catgaagaacctaaccatgaaatgctgcaacattttagacccaaactagattgaa |
324 |
Q |
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| T |
10545345 |
aaaccaccacacaatacacaaatgaatgaatttgtatgtatagaacatgaagaagctaaccatgaaatgctgcaacattttagacccaaactagatcgca |
10545246 |
T |
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| Q |
325 |
caatatcatatacgcattcatgtacaggtctacatgttaaactaggctacccaatgaat |
383 |
Q |
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| T |
10545245 |
caatatcatttacgcattcatgt--aggtctacatgttaaactaggctacacaatgaat |
10545189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 5140664 - 5140946
Alignment:
| Q |
20 |
atcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccnnnnnnnngcatatgttctttatacaaaccaaaaacgagtg |
119 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |||||||| | |||||| || ||| |||| ||| ||||| ||||||| |
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| T |
5140664 |
atcacataaactatacacaaaatgcatcaaataatgaacatacaacatttggtaaacctagcaaat--cagttgtcttttacacagaccaactacgagtg |
5140761 |
T |
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| Q |
120 |
aagaataacatataaaaa--caaggtttaaattcatttcataacacactaaatcggatatcaatattatcattgttgatgtttgttctaataatgatcta |
217 |
Q |
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||||||| |||||||||| |||| |||||| ||||||| | || |||||||| ||||||||||||| |||| ||| |||||||| || ||||||||| |
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| T |
5140762 |
aagaatatcatataaaaaaacaagttttaaactcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgatcta |
5140861 |
T |
|
| Q |
218 |
tctaaccaaaaccaccacacaatacacaaatgaatgaatttatacgtatag-acatgaagaacctaaccatgaaatgctgcaaca |
301 |
Q |
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|||||||||||| |||| ||||| |||||||||||||||||||| ||| || ||||||||||||||| || |||||| ||||||| |
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| T |
5140862 |
tctaaccaaaacaaccatacaatccacaaatgaatgaatttatatgtagagaacatgaagaacctaatcaggaaatggtgcaaca |
5140946 |
T |
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