View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_18 (Length: 397)
Name: NF1433_low_18
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 31346135 - 31346502
Alignment:
| Q |
18 |
gaaagtagacagttatcaatggccatttatgtaacccacttatcagctagcttaaacctgcccttcttagtagtgttttaa-tagcttttcagaagacgg |
116 |
Q |
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| T |
31346135 |
gaaagtagacagttatcaatggccatttatgtaacccacttatcagctagcttaaacctgcccttcttagtagtgttttaaatagcttttcagaagacgg |
31346234 |
T |
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| Q |
117 |
cgcagttagctatgacttggttgtaagagatatgttatttacaaattacaatacctcttgcttttgatctccttgactagaggaattttatggtcatcta |
216 |
Q |
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| T |
31346235 |
cgcagttagctatgacttggttgtaagagatatgttatttac-------aatacctcttgcttttgatctccttgactagaggaattttatggtcatcta |
31346327 |
T |
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| Q |
217 |
atagctgaatcagcttatccttaagaaaataaacaaatatattgtgtcttccattggatcggctcgcatatcatcataagaattttccatatatatgatg |
316 |
Q |
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| T |
31346328 |
atagctgaatcagcttatccttaagaaaataaacaaatatattgtgtcttccattggatcggctcgcatatcatcataagaattttccatatatatgatg |
31346427 |
T |
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| Q |
317 |
gagataaggtgtagacctctccctcatatagcatgcatctt----ttgtttttgttgaatgaatttctctctgtg |
387 |
Q |
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| T |
31346428 |
gagataagctgtagacctctccctcatatagcatgcatcttttaattgtttttgttgaatgaatttctctatgtg |
31346502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 31356828 - 31357015
Alignment:
| Q |
18 |
gaaagtagacagttatcaatggccatttatgtaacccacttatcagctagcttaaacctgcccttcttagtagtgttttaa-tagcttttcagaagacgg |
116 |
Q |
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| T |
31356828 |
gaaaatagatagctatcaatggccatttatgccacccacttatcagctagcttaaacatgcccttcttagtagtgttttaaatagcttttcggaagacag |
31356927 |
T |
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| Q |
117 |
cgcagttagctatgacttggttgtaagagatatgttatttacaaattacaatacctcttgcttttgatctccttgactagaggaattt |
204 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31356928 |
cgcaattagctatgacttggttgtaagagatatgttatttacaaattacaatacctcttgcttttgatctccttgactagaggaattt |
31357015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 276 - 382
Target Start/End: Original strand, 31357036 - 31357139
Alignment:
| Q |
276 |
cggctcgcatatcatcataagaattttccatatatatgatggagataaggtgtagacctctccctcatatagcatgcatcttttgtttttgttgaatgaa |
375 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |
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| T |
31357036 |
cggctcacatatcatcataagaattttccatatatatgatggagataaggtgtagacct---cctcagatagcatgcatcttttctttttgttgaatgaa |
31357132 |
T |
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| Q |
376 |
tttctct |
382 |
Q |
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||||||| |
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| T |
31357133 |
tttctct |
31357139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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