View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_19 (Length: 397)
Name: NF1433_low_19
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 32546709 - 32547077
Alignment:
| Q |
18 |
ataagagtatgatgtgtcgtgaaatcatcggacaaattttttgctatacgtagcatttgcttattctttattactcgtaaaaacgtttaaaaagtttagt |
117 |
Q |
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| T |
32546709 |
ataagagtatgatgtgtcgtgaaatcatcggacaaatttttcgctatacgtagcatttgcttattctttattactcgtaaaaacatttaaaaagtttagt |
32546808 |
T |
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| Q |
118 |
agtagagaaaataaagagaattccaacttgaatattggaccatctttgatcatcatgttaaattaaatgtacttgtcaaagaaagtagtatgttaaagca |
217 |
Q |
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| T |
32546809 |
agtagagaaaataaagagaattccaacttgaatattggaccatctttgatcatcatgttaaattaaatgtacttgtcaaagaaagtagtatgttaaagca |
32546908 |
T |
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| Q |
218 |
tgtgatgtcgtaaacgaaaattgacaggagacaaaaaagggttatagagaaatcagtcaatgagagattaggtagagaggctaaccaaacgacaagagtc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32546909 |
tgtgatgtcgtaaacgaaaattgacaggagacaaaaaagggttatagagaaatcagtcaatgagagattaggtagagaggctaaccaaatgacaagagtc |
32547008 |
T |
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| Q |
318 |
taagtcacaccttccactcctccctcgtaaatttctcctgtattttcgtctcactttcctctcattcat |
386 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
32547009 |
taagtcacaccttccactcctccctcgtaaattcctcctgtattttcgtcccactttcctctcattcat |
32547077 |
T |
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