View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_2 (Length: 753)
Name: NF1433_low_2
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4607854 - 4608087
Alignment:
| Q |
1 |
aaatgggtttttgaaatgaaactatactcaatgagttttttgaactagaagaaaactctttctaactagctagctcacgggtttctttgttttttagtgg |
100 |
Q |
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| T |
4607854 |
aaatgggtttttgaaatgaaactatactcaatgagttttttgaactagaagaaaactctttctaactag----ctcacgggtttctttgttttttagtgg |
4607949 |
T |
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| Q |
101 |
gtatctttcatacgtaatagtacacattgttccagaaagttttccaattgttgttggaaccatttgacagtgattttttagattgttattgggtgagttg |
200 |
Q |
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| T |
4607950 |
gtatctttcatacgtaatagtacacattgttccagaaagttttccaattgttgttggaaccatttgccagtgattttttagattgttattgggtgagttg |
4608049 |
T |
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| Q |
201 |
aaagtactttttgaatttaagattagatatcatatgaa |
238 |
Q |
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| T |
4608050 |
aaagtactttttgaatttaagattagatatcatatgaa |
4608087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 530 - 603
Target Start/End: Original strand, 4608379 - 4608452
Alignment:
| Q |
530 |
gagcctctctctgataactttctgtgacatctttttgtcatgtaatacagttcttcacgagctagtgtcagaag |
603 |
Q |
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| T |
4608379 |
gagcctctctctgataactttctgtgacatctttttgtcatgtaatacagttcttcacgagctagtgtcagaag |
4608452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 395 - 466
Target Start/End: Original strand, 4608244 - 4608315
Alignment:
| Q |
395 |
ctctaattcttgtctcttcaatatgaaggtgttttagattttgaagttttatgcaagtaatattctaatggg |
466 |
Q |
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| T |
4608244 |
ctctaattcttgtctcttcaatatgaaggtgttttagattttgaagttttatgcaagtaatattctaatggg |
4608315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 663 - 737
Target Start/End: Original strand, 4608512 - 4608586
Alignment:
| Q |
663 |
ccaccgtttgtctattgagcacttatctggtattgaataatattttccttaatgtttagattctttagatttttg |
737 |
Q |
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| T |
4608512 |
ccaccgtttgtctattgagcacttatttggtattgaataatattttccttaatgtttagattctttagatttttg |
4608586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 4608132 - 4608187
Alignment:
| Q |
283 |
cctatgattaatgttattatgatttgtctctaattcttgtctctttactatgtagg |
338 |
Q |
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| T |
4608132 |
cctatgattaatgttattatgttttgtctctaattcttgtctctttaccatgtagg |
4608187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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