View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_23 (Length: 372)
Name: NF1433_low_23
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 46875151 - 46874798
Alignment:
| Q |
1 |
aaagcaagagaatgaacattgaacatagctcatagtttaagtaagccgattaaatgaccggttgtaagcctctgtatgcaactctgtaaagaacgaagag |
100 |
Q |
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| T |
46875151 |
aaagcaagagaatgaacattgaacatagctcatagtttaagtaagtggattaaatgaccgattgtaagcctctgtatgcaactctgtaaagaacgaagag |
46875052 |
T |
|
| Q |
101 |
gagtaacagctagagtactatccaagaaacctgtctcatcttgacaggaacaatattaagcaaaactaacatcatagtttgccacataacagatgatata |
200 |
Q |
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| T |
46875051 |
gagtaacagctagagtactatccaagaaacctgtctcatcttgacaggaacaatattaagcaaaactaacatcatagtttgccacataacagatgatata |
46874952 |
T |
|
| Q |
201 |
tcacagcgactgtgaacgcacaatgaatttaccaggccacaaactgtgttctgaattgattgcgaaacagacatacgcaaggagaaactaataaattgag |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874951 |
tcacagtgactgtgaacgcacaatgaatttaccaggccacaaactgtgttctgaattgattgcgaaacagacatacgcaaggagaaactaataaattgag |
46874852 |
T |
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| Q |
301 |
aagctctagtaatgtaaaatttcttacttcacatattaatttatgagtcttgaa |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874851 |
aagctctagtaatgtaaaatttcttacttcacatattaatttatgagtcttgaa |
46874798 |
T |
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