View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_24 (Length: 352)
Name: NF1433_low_24
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 3 - 343
Target Start/End: Complemental strand, 4124289 - 4123949
Alignment:
| Q |
3 |
tatctctcaaaaccctcgccgaccgtttcggcgacgtaaccgacatccccgcttacgcaaaccgccacgctttcattcatctccctcaatgggttctcaa |
102 |
Q |
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| T |
4124289 |
tatctctcaaaaacctcgccgaacgtttcggcgacgtaaccgacatctccgcttacgccaaccgccacgctttcattcatctccctcaatgggttctcaa |
4124190 |
T |
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| Q |
103 |
ccaacgccgtgaacgtaaaaacctcgacatcctcgaacgcaaaggtatcatcaatccacctgaaccgtatgtatgttctgtctgtggtagaaaatgtaaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124189 |
ccaacgccgtgaacgtaaaaacctcgacatcctcgaacgcaaaggtatcatcaatccacctgaaccgtatgtatgttctgtctgtggtagaaaatgtaaa |
4124090 |
T |
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| Q |
203 |
actaacgtagatcttaagaaacacttcaaacagcttcatcaacgtgagagacagaagaagctgaaccgtttgaattctttgaaggggaagaagaggcaga |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124089 |
actaacgtagatcttaagaaacacttcaaacagcttcatcaacgtgagagacagaagaagctgaaccgtttgaattctttgaaggggaagaagaggcaga |
4123990 |
T |
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| Q |
303 |
agtataaggagaggtttgtgagtggtgatgacaagtataat |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123989 |
agtataaggagaggtttgtgagtggtgatgacaagtataat |
4123949 |
T |
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