View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_25 (Length: 351)
Name: NF1433_low_25
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 41228368 - 41228022
Alignment:
| Q |
1 |
ttggactattgaaaatattaaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgtacacaagagagaa |
100 |
Q |
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| T |
41228368 |
ttggactattgaaaatattaaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgtacacaagagagaa |
41228269 |
T |
|
| Q |
101 |
cttcaattcagattgtaatcacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaattgtttaattgttg |
200 |
Q |
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| T |
41228268 |
cttcaattcagattgtaatcacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaattgtttaattgttg |
41228169 |
T |
|
| Q |
201 |
ttgttacagagacaaagagagtaagtatcaagaggactatcgcgggaaacatcaattagctgcaaccaaccaaatgagactttgcttcgatgcttctcca |
300 |
Q |
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| T |
41228168 |
ttgttacagagacaaagagagtaagtatcaagaggactatcgcgggaaacatcaattagttgcaaccaaccaaatgagactttgcttcgatgcttctcca |
41228069 |
T |
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| Q |
301 |
aaacgaaaagttacttcccaagagttcaaaagaggcccactttctcc |
347 |
Q |
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| T |
41228068 |
aaacgaaaagttacttccaaagagttcaagagaggcgcattttctcc |
41228022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 37384176 - 37384503
Alignment:
| Q |
20 |
aaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgtacacaagagagaacttcaattcagattgtaat |
119 |
Q |
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| T |
37384176 |
aaccaagatcttgaaagaatctgttggaaagggagtttagaaatcaagaatcagaaccctttctgcgtacacaagagagaccttcaattcagattgtaat |
37384275 |
T |
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| Q |
120 |
cacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaattgtttaattgttgttgttacagagacaaagag |
219 |
Q |
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|| |||||||||||| |||||||||||||||| || ||||||||||||| |||| ||||||||||||||||| |||| | ||||| |||||| |||| |
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| T |
37384276 |
caggctttatctttctctgttctatttatataatttggttgattattttttttgtcaacaacataaattgttttattgatattgttgcagagatggagag |
37384375 |
T |
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| Q |
220 |
agtaagtatcaagaggactatcgcgggaaacatcaattagctgcaaccaaccaaatgagactttgcttcgatgcttctccaaaacgaaaagttacttccc |
319 |
Q |
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| || | |||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||| |
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| T |
37384376 |
aatacgcatcaagaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagattttgcttggatggttcttcaaaacgaaaagttacttcca |
37384475 |
T |
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| Q |
320 |
aagagttcaaaagaggcccactttctcc |
347 |
Q |
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| T |
37384476 |
aagagttcaacaaaggcacattttctcc |
37384503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 37376808 - 37377113
Alignment:
| Q |
18 |
ttaaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgtacacaagagagaacttcaattcagattgta |
117 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||| |||||||| |
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| T |
37376808 |
ttaaccgagatcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaaccctttctgcgtacacaaaagagaacttccattgagattgta |
37376907 |
T |
|
| Q |
118 |
atcacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaattgtttaattgttgttgttacagagacaaag |
217 |
Q |
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|| || ||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||||| || |
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| T |
37376908 |
ataacgctttatctttctatgctctgtttatataacttatttgactatttttgttgttaacaacataaattatttaatttatgttgttacagagatggag |
37377007 |
T |
|
| Q |
218 |
agagtaagtatcaagaggactatcgcgggaaacatcaattagctgcaaccaaccaaatgagactttgcttcgatgcttctccaaaacgaaaagttacttc |
317 |
Q |
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|||||| |||||| ||||||||||||||||||||||| || | ||||||||||||||||||| ||||||| |||| |||| |||||||||||| |||||| |
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| T |
37377008 |
agagtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagtttgcttagatggttctacaaaacgaaaagatacttc |
37377107 |
T |
|
| Q |
318 |
ccaaga |
323 |
Q |
| |
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| |||| |
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| T |
37377108 |
caaaga |
37377113 |
T |
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