View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_26 (Length: 345)
Name: NF1433_low_26
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 34408162 - 34408491
Alignment:
| Q |
1 |
gtaggaggcttctttccaaatataaactttttagataaattatgttaggcggcatgcaaatttgtagcttattctttagcaagggcattaaaa-ttgcat |
99 |
Q |
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| T |
34408162 |
gtaggatgcttctttccaaatataaactttttagataaattttgttaggcggcatgcaaatttgtagcttattctttagcaagggcattaaaaattgcat |
34408261 |
T |
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| Q |
100 |
gttagtgtccatgtatttgattacataccatcttgtatcttttccactttgatgaatgaaataatacaattttgttgctatatnnnnnnnnnnnntctaa |
199 |
Q |
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| T |
34408262 |
gttagtgtcgatgtatttgattacataccatcttgtatcttttccactttgatgaatgaaataatacaattttgttgctata----agaaaaaaatctaa |
34408357 |
T |
|
| Q |
200 |
ttaactattaatgtaataatatatacacactctactactattataag----nnnnnnncaacattttagattcaattattgcatgaaatcaaaaggtaga |
295 |
Q |
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| T |
34408358 |
ttaactattaatgtaataatatatacacactctactactattataagcaaaaaaaaaaaaacattttagattcaattattcaatgaaatcaaaaggtaga |
34408457 |
T |
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| Q |
296 |
tttttgttatggtagtgactggaggggaggatac |
329 |
Q |
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| T |
34408458 |
tttttgttatggtagtgactggaggggaggatac |
34408491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 29799999 - 29799906
Alignment:
| Q |
73 |
tctttagcaagggcattaaaattgcatgttagtgtccatgtatttgattacataccatcttgtatcttttccactttg-atgaatgaaataata |
165 |
Q |
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| T |
29799999 |
tctttagcaaaggcgtcaaaattgtatgctagttacgatgtatttgattacataccatcttatatctttagcattttgcatgaatgaaataata |
29799906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 32912863 - 32913005
Alignment:
| Q |
33 |
agataaattatgttaggcggcatgcaaattt-gtagcttattctttagcaagggcattaaaattgcatgttagtgtccatgtatttgattacataccatc |
131 |
Q |
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|||||| || ||||||||| | |||||||| || ||| | |||||| ||||||| | ||||||| ||| |||| ||||||||||||||||||| ||| |
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| T |
32912863 |
agataagttttgttaggcgacgagcaaattttgttgctcactctttaacaagggcgtcaaaattgtatgctagttaccatgtatttgattacatatcatt |
32912962 |
T |
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| Q |
132 |
tt---------gtatcttttccactttgatgaatgaaataata |
165 |
Q |
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| T |
32912963 |
tttactatcgtgtatctttaccactttgatgaatgaaataata |
32913005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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