View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_27 (Length: 339)
Name: NF1433_low_27
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_27 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 37829133 - 37829466
Alignment:
| Q |
7 |
atctatctgttgaaacaaattgactataaaatgttgaacactgaattcaatacatcacaaacacacattgatatcactattatgctactaatatggtaga |
106 |
Q |
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| T |
37829133 |
atctatctgttgaaacaaattgactgtaaaatgttgaacactgaattcaatacatcacaaacacacatcgatatcactattatgctactaatatggtgga |
37829232 |
T |
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| Q |
107 |
gatcatcaaagattacatgaagaatgattgaaattttgttttgaaacatactctttgt----gaaatgcttgtacagatattcttgcaaagatgaaagct |
202 |
Q |
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| T |
37829233 |
gatcatcaaagattacatgaagaatgattgaaattttgttttgaaacatactctttgtgaaggaaatgcttatacgaatattcttgc---gatgaaagct |
37829329 |
T |
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| Q |
203 |
aactccgtagaatctttgattatggttaaagaatcttttcccaatatgctaatctattagaatattttacataaaaacaaaccttgccagccttgtgtgg |
302 |
Q |
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| T |
37829330 |
aactccgtagaatctttgattatggttaaagaatcttttcccaatatgctaatctattagaacattttacataaaaacaaaccttgccagccttgtgtgg |
37829429 |
T |
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| Q |
303 |
atgagtatgagaacagagaacatcatcccctatcatc |
339 |
Q |
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| T |
37829430 |
atgagtatgagaacagagaacatcaccccctatcatc |
37829466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 33200888 - 33200983
Alignment:
| Q |
69 |
acacattgatatcactattatgctactaatatggtagagatcatcaaagattacatgaagaatgattgaaattttgttttgaaacatactctttgtgaa |
167 |
Q |
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| T |
33200888 |
acacatcgatatcacaattatgcta---atatgatggagattatcaaagattacatgaagaaggattgaaattttgttttgaaacatgctcttcgtgaa |
33200983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 335
Target Start/End: Original strand, 37833188 - 37833275
Alignment:
| Q |
248 |
atgctaatctattagaatattttacataaaaacaaaccttgccagccttgtgtggatgagtatgagaacagagaacatcatcccctat |
335 |
Q |
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| T |
37833188 |
atgctaacctattagaacatgttacatagaaatgaaccctgccaaccttgtgtggaggagtacgacaacaaaaaacaccatcccctat |
37833275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 38714404 - 38714268
Alignment:
| Q |
111 |
atcaaagattacatgaagaatgattgaaattttgttttgaaacatactctttgtga----aatgcttgtac--agatattcttgcaaagatgaaagctaa |
204 |
Q |
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| T |
38714404 |
atcaaagattacatgaagaatgactgaaatattgttttgaaacatactcttcgtgaatggaatgcttgtgcggatatatccttgcaaagatgagagctaa |
38714305 |
T |
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| Q |
205 |
ctccgtagaatctttgattatggttaaagaatctttt |
241 |
Q |
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| T |
38714304 |
ttgtgtagatcctttgattatagttaatgaatttttt |
38714268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 4953324 - 4953278
Alignment:
| Q |
116 |
agattacatgaagaatgattgaaattttgttttgaaacatactcttt |
162 |
Q |
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| T |
4953324 |
agatttcacgaagaaggattgaaattttgttttgaaacatactcttt |
4953278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 3392150 - 3392237
Alignment:
| Q |
77 |
atatcactattatgctactaatatggtagagatcatcaaagattacatgaagaatgattgaaattttgttttgaaacatactctttgtgaa |
167 |
Q |
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| T |
3392150 |
atatcactattatgcta---atatgttggagattattagagatttcatgaataaagattgaaatttctttttgaagcacactctttgtgaa |
3392237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 43928762 - 43928690
Alignment:
| Q |
95 |
taatatggtagagatcatcaaagattacatgaagaatgattgaaattttgttttgaaacatactctttgtgaaa |
168 |
Q |
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| T |
43928762 |
taatatggtggagactatcaaagattacataaaaaatgattgga-ttttgttttgaaaaatactcttcgtgaaa |
43928690 |
T |
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