View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_33 (Length: 324)
Name: NF1433_low_33
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 308
Target Start/End: Complemental strand, 7495002 - 7494697
Alignment:
| Q |
4 |
ggtagattattcttcaggactaaatgtcatcctaaccttaagttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtga |
103 |
Q |
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|||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7495002 |
ggtaaattcttcttccggactaaatgtcatcctaaccttaagttcatcttcatgaacaatattttcttcaaaattatcatctcaattctcatttatgtga |
7494903 |
T |
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| Q |
104 |
tcactctcctcttggtcagatgaggtaaatcttacccccactagtgcaccga-nnnnnnngaaacaagatacttaaattaatcaactaacataataagcc |
202 |
Q |
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| T |
7494902 |
tcactctcctctttgtcagatgaggtaaatcttacccccactagtgccccgattttttttaaaacaagatacttaaattaatcaactaacataataagcc |
7494803 |
T |
|
| Q |
203 |
aagacaacaagaatctgtccaactaaataagaaaaagcaacaaatagacaaattatactcactctttcagactgtgtcaaaagaagagttttgggatcga |
302 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
7494802 |
aagacaacaagaatctgtccaactaagtaagaaaaagcaataaatagacaaattacactcactctttcagtctgtgtcaaaagaagagttttgggatcaa |
7494703 |
T |
|
| Q |
303 |
tgaata |
308 |
Q |
| |
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|||||| |
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| T |
7494702 |
tgaata |
7494697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 35048813 - 35048700
Alignment:
| Q |
13 |
ttcttcaggactaaatgtcatcctaaccttaagt---tcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactc |
109 |
Q |
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|||||||| |||||||||||||| || | || || |||||| | |||||||||||| |||| ||||| ||||| | || ||||||||||||||| | |
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| T |
35048813 |
ttcttcagaactaaatgtcatcccaatcctaggttcctcatctgcttgaacaatatttgcttctaaattttcatcactgttttcatttatgtgatcaacc |
35048714 |
T |
|
| Q |
110 |
tcctcttggtcaga |
123 |
Q |
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| T |
35048713 |
tcctcttggacaga |
35048700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 53325407 - 53325484
Alignment:
| Q |
46 |
ttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga |
123 |
Q |
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||||||| | |||||||||||| |||| ||||| | ||| | ||| ||||||||||||||| |||||||||| |||| |
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| T |
53325407 |
ttcatctgcttgaacaatatttgcttctaaatttttatcactattttcatttatgtgatcaacctcctcttggacaga |
53325484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 14122451 - 14122374
Alignment:
| Q |
46 |
ttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga |
123 |
Q |
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||||||| | |||||||||||| |||| ||||| ||||| | ||| ||||||| ||||||| |||||||||| |||| |
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| T |
14122451 |
ttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttaggtgatcaacctcctcttggacaga |
14122374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 1177973 - 1177867
Alignment:
| Q |
13 |
ttcttcaggactaaatgtcatcctaaccttaagttcat---cttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactc |
109 |
Q |
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|||||||| || ||||| ||||| |||||||||||||| |||| |||| ||||||| |||| ||||| ||| |||| |||||||||||||| || |
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| T |
1177973 |
ttcttcagaacaaaatgacatcccaaccttaagttcatctgcttcttgaataatatttgcttctaaatttccattgcaatattcatttatgtgatcgatc |
1177874 |
T |
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| Q |
110 |
tcctctt |
116 |
Q |
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||||||| |
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| T |
1177873 |
tcctctt |
1177867 |
T |
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