View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_36 (Length: 320)

Name: NF1433_low_36
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_36
NF1433_low_36
[»] chr5 (15 HSPs)
chr5 (18-281)||(15506497-15506761)
chr5 (237-294)||(26212685-26212742)
chr5 (244-302)||(32269906-32269964)
chr5 (237-302)||(2566197-2566262)
chr5 (240-300)||(15809991-15810052)
chr5 (225-288)||(42921651-42921714)
chr5 (244-306)||(15292134-15292196)
chr5 (237-294)||(13167012-13167069)
chr5 (237-310)||(22188757-22188830)
chr5 (257-294)||(27336643-27336680)
chr5 (237-310)||(35310380-35310453)
chr5 (237-302)||(430542-430607)
chr5 (225-294)||(25663122-25663191)
chr5 (240-300)||(15833004-15833064)
chr5 (246-302)||(23023535-23023591)
[»] chr7 (16 HSPs)
chr7 (233-300)||(21326936-21327003)
chr7 (237-300)||(19277235-19277298)
chr7 (237-302)||(27521411-27521476)
chr7 (237-302)||(48539121-48539186)
chr7 (225-300)||(982891-982966)
chr7 (237-302)||(28517389-28517454)
chr7 (237-306)||(40726582-40726651)
chr7 (240-300)||(25187036-25187096)
chr7 (237-311)||(4501190-4501264)
chr7 (237-302)||(10905058-10905123)
chr7 (237-294)||(24527537-24527594)
chr7 (237-300)||(41117872-41117935)
chr7 (237-302)||(22197927-22197991)
chr7 (237-302)||(22239830-22239894)
chr7 (237-310)||(43856806-43856879)
chr7 (237-302)||(45613944-45614009)
[»] chr2 (12 HSPs)
chr2 (237-310)||(13413283-13413356)
chr2 (236-302)||(23485037-23485103)
chr2 (237-311)||(44684960-44685034)
chr2 (237-302)||(17344578-17344643)
chr2 (240-300)||(9685520-9685580)
chr2 (237-306)||(4413168-4413237)
chr2 (237-302)||(41868010-41868075)
chr2 (233-292)||(19161881-19161940)
chr2 (226-303)||(18745045-18745122)
chr2 (224-302)||(44686356-44686434)
chr2 (237-294)||(5532368-5532425)
chr2 (257-302)||(27494251-27494296)
[»] scaffold0148 (1 HSPs)
scaffold0148 (237-302)||(33190-33255)
[»] scaffold0490 (1 HSPs)
scaffold0490 (237-294)||(6282-6339)
[»] chr8 (7 HSPs)
chr8 (225-302)||(24124968-24125045)
chr8 (237-302)||(38815234-38815299)
chr8 (233-300)||(22589434-22589501)
chr8 (237-310)||(3187902-3187974)
chr8 (237-294)||(37514169-37514226)
chr8 (233-302)||(43823929-43823998)
chr8 (250-302)||(4699811-4699863)
[»] chr4 (12 HSPs)
chr4 (237-302)||(16955400-16955465)
chr4 (237-302)||(4419203-4419268)
chr4 (237-300)||(34107798-34107861)
chr4 (237-302)||(600794-600859)
chr4 (237-302)||(3329936-3330001)
chr4 (237-302)||(23255653-23255718)
chr4 (233-306)||(25504231-25504304)
chr4 (237-310)||(56462208-56462281)
chr4 (237-281)||(53170474-53170518)
chr4 (237-306)||(30940834-30940903)
chr4 (237-310)||(53619518-53619591)
chr4 (233-281)||(6865918-6865966)
[»] chr3 (12 HSPs)
chr3 (237-294)||(53785657-53785714)
chr3 (239-302)||(39583333-39583396)
chr3 (237-303)||(37133101-37133167)
chr3 (237-294)||(44784-44841)
chr3 (237-301)||(44198708-44198772)
chr3 (237-300)||(32546737-32546800)
chr3 (237-311)||(4763895-4763968)
chr3 (237-302)||(13582450-13582515)
chr3 (237-294)||(51234564-51234621)
chr3 (237-281)||(52741614-52741658)
chr3 (237-294)||(26856864-26856921)
chr3 (241-302)||(38145996-38146057)
[»] chr1 (10 HSPs)
chr1 (237-294)||(21472951-21473008)
chr1 (237-294)||(28041229-28041286)
chr1 (245-292)||(868513-868560)
chr1 (237-300)||(24177613-24177676)
chr1 (240-302)||(45659751-45659813)
chr1 (237-302)||(34644506-34644571)
chr1 (237-292)||(31737425-31737480)
chr1 (237-303)||(20259899-20259965)
chr1 (261-310)||(47459614-47459663)
chr1 (237-281)||(29169895-29169939)
[»] chr6 (6 HSPs)
chr6 (244-302)||(959521-959579)
chr6 (237-302)||(17249407-17249472)
chr6 (237-302)||(32115658-32115723)
chr6 (237-277)||(45779-45819)
chr6 (253-302)||(3137365-3137414)
chr6 (237-302)||(34554379-34554443)
[»] scaffold0009 (1 HSPs)
scaffold0009 (237-302)||(103046-103111)
[»] scaffold0031 (1 HSPs)
scaffold0031 (238-310)||(49347-49419)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 15506497 - 15506761
Alignment:
Q  18 ttattctattatctttagaacacgaaagtagatgtaacttcaaaataattcagtttggacaaactagttacgattagaggtctaataagagctagacagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  15506497 ttattctattatctttagaacacgaaagtagatgtaacttcaaaataaatcactttggacaaactagttacgattagaggtctaataagagctagacaag 15506596  T
Q  118 ttttatttgcagccaattggattggatgtagggaacagtttatg-tagttacatgatccgagttgtgggtgaagtagtctttgtacatctttcattatct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  15506597 ttttatttgcagccaattggattggatgtagggaacagtttatgttagttacatgatccgagttgtgggataagtagtctttgtacatctttcattatct 15506696  T
Q  217 agcaaattttgttggtcttttacatagagttcaaaaggtcatgtatagcaatgctatgtctccta 281  Q
    |  || |||||||||  |||||| ||||||| ||||||| |||||||||||||  ||||||||||    
T  15506697 aataatttttgttggctttttacgtagagtttaaaaggttatgtatagcaatgtcatgtctccta 15506761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 26212685 - 26212742
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    |||||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  26212685 tacatagagttcaaaatgtcatgtatggcaatattatgtctcctaagtccatgaatgt 26212742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 32269906 - 32269964
Alignment:
Q  244 agttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||||||||| |||||||||  |||||||||| |||||||||||| |||||||    
T  32269906 agttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttta 32269964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 2566197 - 2566262
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||  ||||| ||||| |||||||    
T  2566197 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatcaatgttgtgttta 2566262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 15810052 - 15809991
Alignment:
Q  240 atagagttcaaaa-ggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    ||||||||||||| |||||||||||||||||  |||||||||| | ||||||||||||||||    
T  15810052 atagagttcaaaatggtcatgtatagcaatgtcatgtctcctaggcccatgaatgtcgtgtt 15809991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 42921714 - 42921651
Alignment:
Q  225 ttgttggtcttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccat 288  Q
    ||||||| ||| ||||||||||||| ||||||||| ||| |||||  |||||||||||||||||    
T  42921714 ttgttggccttctacatagagttcagaaggtcatgcataacaatgtcatgtctcctaagtccat 42921651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 15292134 - 15292196
Alignment:
Q  244 agttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgag 306  Q
    |||||||||||||||| |||||||||  |  ||||||| |||||||||||| |||||||||||    
T  15292134 agttcaaaaggtcatgcatagcaatgtcacatctcctaggtccatgaatgttgtgtttatgag 15292196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 13167012 - 13167069
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    |||||||||| |||| ||| ||| ||||||||| ||||||||||| ||||||||||||    
T  13167012 tacatagagtccaaagggttatgcatagcaatggtatgtctcctaggtccatgaatgt 13167069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 22188757 - 22188830
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    ||||||||||||||||||||||| ||| ||||   ||||||||||  | ||||||||| ||||||| |||||||    
T  22188757 tacatagagttcaaaaggtcatgcataacaatatcatgtctcctagattcatgaatgttgtgtttacgagaatt 22188830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 27336680 - 27336643
Alignment:
Q  257 atgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  27336680 atgtatagcaatgttatgtctcctaagtccatgaatgt 27336643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 35310453 - 35310380
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    |||||||||| |||| |||  || ||| ||||| ||||||||||| |||||||||||| ||||||| |||||||    
T  35310453 tacatagagtccaaagggttttgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaatt 35310380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 430607 - 430542
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||| | |||| ||| ||| |||| |||| ||||||||||| |||||||||||| |||||||    
T  430607 tacatagattccaaagggttatgcatagtaatgttatgtctcctaggtccatgaatgttgtgttta 430542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 25663122 - 25663191
Alignment:
Q  225 ttgttggtcttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    |||||| |||| |||||||||| |||| ||| ||| ||| ||||| |||||| |||| ||||||||||||    
T  25663122 ttgttgatcttctacatagagtccaaagggttatgcatatcaatgttatgtcccctaggtccatgaatgt 25663191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 15833064 - 15833004
Alignment:
Q  240 atagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    |||||||||||| ||||||||||| |||||  | ||||||||  | |||||||||||||||    
T  15833064 atagagttcaaatggtcatgtataacaatgtcacgtctcctagattcatgaatgtcgtgtt 15833004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 23023591 - 23023535
Alignment:
Q  246 ttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||||||| ||| |||||  |||||||||| ||| |||||||| |||||||    
T  23023591 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgttta 23023535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 21326936 - 21327003
Alignment:
Q  233 cttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||    
T  21326936 cttttacatagagttcaaaaggtcatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtt 21327003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 19277298 - 19277235
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    ||||||||||||||||||||||| |||||||||  |||||||||| |||||||||||| |||||    
T  19277298 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 19277235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 27521476 - 27521411
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||||||| ||| |||||  |||||||||||||| |||||||| |||||||    
T  27521476 tacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgttta 27521411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 48539186 - 48539121
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||| |||||||||||| |||||||||  |||||||||| |||||||||||| |||||||    
T  48539186 tacatagagtccaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttta 48539121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 982966 - 982891
Alignment:
Q  225 ttgttggtcttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    ||||||| ||| ||||||||||||||||||||||| ||| |||||  |||||| ||| |||||||||||| |||||    
T  982966 ttgttggccttctacatagagttcaaaaggtcatgcatatcaatgtcatgtcttctatgtccatgaatgttgtgtt 982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 28517389 - 28517454
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||| |||| ||| ||| ||| ||||| |||||||||||||||||||||||| |||||||    
T  28517389 tacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatgttgtgttta 28517454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 40726582 - 40726651
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgag 306  Q
    |||||||||| |||| ||| ||| ||| |||||||||||||||||  ||||||||||| |||||||||||    
T  40726582 tacatagagtccaaagggttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgag 40726651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 25187036 - 25187096
Alignment:
Q  240 atagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    |||||||||||||||||||| |||||||||  ||||||||||  ||||||||||| |||||    
T  25187036 atagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgtgtt 25187096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 4501264 - 4501190
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatta 311  Q
    ||||||||||||||||| ||||| |||||||||  ||||||||||  | ||||||||| ||||||| ||| ||||    
T  4501264 tacatagagttcaaaagttcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggatta 4501190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 10905123 - 10905058
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||||||||  | |||| ||| |||||  |||||||||| ||||||||||||||||||||    
T  10905123 tacatagagttcaaagagccatgcataacaatgtcatgtctcctaggtccatgaatgtcgtgttta 10905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 24527594 - 24527537
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||||||||||| |||||||||  || ||||||  ||||||||||||    
T  24527594 tacatagagttcaaaaggtcatgcatagcaatgtcatttctccttggtccatgaatgt 24527537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 41117872 - 41117935
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    ||||||||||| ||||| ||||| |||||||||  |||| ||||| |||||||||||| |||||    
T  41117872 tacatagagtttaaaagatcatgcatagcaatgtcatgtttcctaggtccatgaatgttgtgtt 41117935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 22197991 - 22197927
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||| ||| ||||||| |  |||||||||| ||| |||||||| |||||||    
T  22197991 tacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgttta 22197927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 22239830 - 22239894
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||| ||| ||||||| |  |||||||||| ||| |||||||| |||||||    
T  22239830 tacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgttta 22239894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 43856879 - 43856806
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    ||||||||||||||| ||||||| | | |||||  ||| |||||| ||||||||||||  |||||| |||||||    
T  43856879 tacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaatt 43856806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 45613944 - 45614009
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||| ||||| ||| |||||  |  ||||||| |||||||||||| |||||||    
T  45613944 tacatagagttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgttta 45614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 13413356 - 13413283
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    ||||||||||||||||||||||| ||| |||||  |||||||||| |||||||||||| |||||||||||||||    
T  13413356 tacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttatgagaatt 13413283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 23485037 - 23485103
Alignment:
Q  236 ttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||| || |||||||    
T  23485037 ttacatagagttcaaaagatcatgcataacaatgctatgtctcctaggtccatgaacgttgtgttta 23485103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 44684960 - 44685034
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatta 311  Q
    ||||||||||||||| ||||||| ||| ||||  |||||||  ||||||||||||||| ||||||||||||||||    
T  44684960 tacatagagttcaaagggtcatgcataacaatattatgtcttataagtccatgaatgttgtgtttatgagaatta 44685034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 17344643 - 17344578
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||||||| ||| |||||  |||||||||| |||||||||||| |||||||    
T  17344643 tacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta 17344578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 9685520 - 9685580
Alignment:
Q  240 atagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    |||||||||||||||||||| |||||||||  |||||||||| |||||||||||| |||||    
T  9685520 atagagttcaaaaggtcatggatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 9685580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 4413168 - 4413237
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgag 306  Q
    ||||||| ||||||||||||||| ||||||| |  |||||||||| |||||||||||| ||||| |||||    
T  4413168 tacatagggttcaaaaggtcatgcatagcaaagtcatgtctcctaggtccatgaatgttgtgttcatgag 4413237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 41868010 - 41868075
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||||||| ||| |||||  |||||||| | |||||||||||| |||||||    
T  41868010 tacatagagttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgttta 41868075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 19161881 - 19161940
Alignment:
Q  233 cttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaat 292  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||||| ||| ||||||    
T  19161881 cttttacatagagttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcaatgaat 19161940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 18745045 - 18745122
Alignment:
Q  226 tgttggtcttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttat 303  Q
    |||||| ||| ||||||||||||||||| ||||| |||||||||  || | ||||| ||| |||||||| ||||||||    
T  18745045 tgttggccttctacatagagttcaaaagatcatgcatagcaatgtcatatttcctaggtctatgaatgttgtgtttat 18745122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 302
Target Start/End: Complemental strand, 44686434 - 44686356
Alignment:
Q  224 tttgttggtcttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||  ||| |||||||| | |||| ||| ||| ||||||||| ||||||||||| |||| ||||||| |||||||    
T  44686434 tttgttgaccttctacatagattccaaagggttatgcatagcaatgttatgtctcctaggtccgtgaatgttgtgttta 44686356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 5532425 - 5532368
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||| ||||||| | | |||||| ||| ||||||||| |||||||||    
T  5532425 tacatagagttcaaagggtcatgcacaacaatgccatgactcctaagttcatgaatgt 5532368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 27494296 - 27494251
Alignment:
Q  257 atgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||| ||||||||||||||| |||||| | |||||||    
T  27494296 atgtatagcaatgttatgtctcctaagtctatgaatattgtgttta 27494251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 33255 - 33190
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||| ||||||||| ||||||||||    
T  33255 tacatagagttcaaaaggtcatgcatagcaattttatgtctcctaggtccatgaacgtcgtgttta 33190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 6339 - 6282
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  6339 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgt 6282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 24125045 - 24124968
Alignment:
Q  225 ttgttggtcttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||| ||| |||||| |||||||||||||||| |||||||||  ||||||| || |||||||||||| |||||||    
T  24125045 ttgttggccttctacataaagttcaaaaggtcatgcatagcaatgtcatgtctcataggtccatgaatgttgtgttta 24124968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 38815299 - 38815234
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||| ||||||| |||||||||  |||||||||| |||||||||||| |||||||    
T  38815299 tacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttta 38815234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 22589434 - 22589501
Alignment:
Q  233 cttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||| || ||| |||||||| |||||    
T  22589434 cttttacatagagttcaaaaggtcatgcatagcaatgtcatgtctcataggtctatgaatgttgtgtt 22589501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 3187974 - 3187902
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    |||||||||| |||| ||| ||| ||||||||| ||||||||||| |||||||||||| ||||||| |||||||    
T  3187974 tacatagagt-caaagggttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaatt 3187902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 37514226 - 37514169
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||||||||||| ||| ||||| || ||||| || ||||||||||||    
T  37514226 tacatagagttcaaaaggtcatgcatatcaatgttacgtctcttaggtccatgaatgt 37514169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 43823998 - 43823929
Alignment:
Q  233 cttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||| |||||||||||||| ||||||| |||||||||  |||||||| |  ||||| ||||| |||||||    
T  43823998 ctttcacatagagttcaaatggtcatgcatagcaatgtcatgtctccgagatccattaatgttgtgttta 43823929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 4699863 - 4699811
Alignment:
Q  250 aaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||| ||||||||  |||||| |||| |||||||||||| |||||||    
T  4699863 aaaggtcatgaatagcaatattatgtcacctaggtccatgaatgttgtgttta 4699811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 16955465 - 16955400
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||||||| |||||||||  |||||||||| | |||||||||| |||||||    
T  16955465 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgttta 16955400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 4419268 - 4419203
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||| ||| ||| ||| ||||| ||||||||||| |||||||||||| |||||||    
T  4419268 tacatagagttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgttta 4419203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 34107798 - 34107861
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    |||||||||||||||| |||||| ||| ||||| |||||||||||  ||||||||||| |||||    
T  34107798 tacatagagttcaaaaagtcatgcataacaatgttatgtctcctagatccatgaatgttgtgtt 34107861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 600794 - 600859
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||||||||||||||||| | |||  |||||||||| |||||| ||||  |||||||    
T  600794 tacatagagttcaaaaggtcatgtataactatgtcatgtctcctaggtccattaatgctgtgttta 600859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 3330001 - 3329936
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||| |||| ||| ||| ||||||||| ||||||||||| |||||||||||  |||||||    
T  3330001 tacatagagtccaaagggttatgcatagcaatgttatgtctcctaggtccatgaatgctgtgttta 3329936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 23255718 - 23255653
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||| |||| ||| ||| ||| ||||| |||||||||||||||||||||| | |||||||    
T  23255718 tacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgttta 23255653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 25504304 - 25504231
Alignment:
Q  233 cttttacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgag 306  Q
    |||||| |||||||| ||||||||||| |||| ||||  ||||||| || |||||||||| | |||||||||||    
T  25504304 cttttaaatagagtttaaaaggtcatgcatagtaatgtcatgtctcataggtccatgaatattgtgtttatgag 25504231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 56462208 - 56462281
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    ||||||||||||||| | ||||| ||  |||||  ||||||||||||||||| ||||| ||||||| |||||||    
T  56462208 tacatagagttcaaaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgtttacgagaatt 56462281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 53170518 - 53170474
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctccta 281  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||    
T  53170518 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctccta 53170474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 30940834 - 30940903
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgag 306  Q
    ||||||||||||||||||||||| ||| |||||  || | ||||| ||| |||||||| ||||| |||||    
T  30940834 tacatagagttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgttcatgag 30940903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 53619591 - 53619518
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    ||||||||||  ||| ||| ||| ||| ||||| |||||||| || |||||||||||| ||||||| |||||||    
T  53619591 tacatagagtctaaagggttatgcataacaatgttatgtctcttaggtccatgaatgttgtgtttacgagaatt 53619518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 6865918 - 6865966
Alignment:
Q  233 cttttacatagagttcaaaaggtcatgtatagcaatgctatgtctccta 281  Q
    ||||||||||||||||||| ||| ||| |||||||||  ||||||||||    
T  6865918 cttttacatagagttcaaagggtaatgcatagcaatgtcatgtctccta 6865966  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 53785714 - 53785657
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  53785714 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgt 53785657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 39583333 - 39583396
Alignment:
Q  239 catagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||||| ||||||| |||||||||  |||||||||| || |||||||||||||||||    
T  39583333 catagagttcaaagggtcatgcatagcaatgtcatgtctcctaggttcatgaatgtcgtgttta 39583396  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 37133101 - 37133167
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttat 303  Q
    |||||||||||| |||||||||| |||||||||  |||||||||||||  |||||||| ||||||||    
T  37133101 tacatagagttctaaaggtcatgcatagcaatgtcatgtctcctaagttaatgaatgttgtgtttat 37133167  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 44841 - 44784
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||||||||||| |||||||||  |||| ||||| ||||||||||||    
T  44841 tacatagagttcaaaaggtcatgcatagcaatgtcatgtttcctaggtccatgaatgt 44784  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 44198772 - 44198708
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttt 301  Q
    ||||||||||||| ||||| ||| |||||||||  |||||||||| |||||||||||| ||||||    
T  44198772 tacatagagttcagaaggttatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttt 44198708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 32546800 - 32546737
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    |||||||||||||||| |||||| |||| ||||  |||||||||| |||||||||||| |||||    
T  32546800 tacatagagttcaaaaagtcatgcatagtaatgtcatgtctcctaggtccatgaatgttgtgtt 32546737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 4763895 - 4763968
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatta 311  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||  |||||||||||| ||||||| ||| ||||    
T  4763895 tacatagagttcaaaaggttatgcatagcaatgtcatgtctcct-ggtccatgaatgttgtgtttacgaggatta 4763968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 13582515 - 13582450
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||| |||||||||||||||||| ||| |||||  |||||||||| | |||||||||| |||||||    
T  13582515 tacagagagttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgttta 13582450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 51234621 - 51234564
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||||||| ||| ||| ||||| ||||||||||||| |||| |||||    
T  51234621 tacatagagttcaaaaggttatgcataacaatgttatgtctcctaagcccattaatgt 51234564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 52741614 - 52741658
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctccta 281  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||    
T  52741614 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctccta 52741658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 26856864 - 26856921
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||| ||||||| |||||||||  |||||||||| ||  ||||||||    
T  26856864 tacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgt 26856921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 38146057 - 38145996
Alignment:
Q  241 tagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||| ||||||| ||| |||||  |||||||||| ||||||||| || |||||||    
T  38146057 tagagttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgttta 38145996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 21473008 - 21472951
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  21473008 tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgt 21472951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 28041229 - 28041286
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgt 294  Q
    ||||||||||||||||||||||| |||||||||  |||||  ||||||||||||||||    
T  28041229 tacatagagttcaaaaggtcatgcatagcaatgtcatgtcctctaagtccatgaatgt 28041286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 868513 - 868560
Alignment:
Q  245 gttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaat 292  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||    
T  868513 gttcaaaaggtcatgcatagcaatgtcatgtctcctaagtccatgaat 868560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 24177613 - 24177676
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtt 300  Q
    |||||||||||||||| |||||| |||||||||  || ||||||| |||||||||||| |||||    
T  24177613 tacatagagttcaaaaagtcatgcatagcaatgtcatatctcctaggtccatgaatgttgtgtt 24177676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 45659751 - 45659813
Alignment:
Q  240 atagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||||||| ||||| |||||||||  |||||||||| ||| || |||||||||||||    
T  45659751 atagagttcaaaagatcatgcatagcaatgtcatgtctcctaggtcaataaatgtcgtgttta 45659813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 34644571 - 34644506
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||| |||| ||| ||| ||| ||||| ||||||||||| |||||||||||| |||||||    
T  34644571 tacatagagtccaaagggttatgcatatcaatgttatgtctcctaggtccatgaatgttgtgttta 34644506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 31737425 - 31737480
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaat 292  Q
    ||||||||||||||||||||||| ||| ||||| ||||| |||||  |||||||||    
T  31737425 tacatagagttcaaaaggtcatgcatatcaatgttatgtttcctagatccatgaat 31737480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 20259899 - 20259965
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttat 303  Q
    ||||||||||||||||||||||| |||| ||||  ||||||| |||||  || ||||| ||||||||    
T  20259899 tacatagagttcaaaaggtcatgcatagtaatgtcatgtctcataagttaataaatgttgtgtttat 20259965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 47459663 - 47459614
Alignment:
Q  261 atagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    ||||||||| ||||||||||||||| || ||||| ||||||| |||||||    
T  47459663 atagcaatgttatgtctcctaagtctataaatgttgtgtttacgagaatt 47459614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 29169895 - 29169939
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctccta 281  Q
    ||||||||||||||||||||||| | |||||||  ||||||||||    
T  29169895 tacatagagttcaaaaggtcatgcacagcaatgtcatgtctccta 29169939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 959579 - 959521
Alignment:
Q  244 agttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||||||||| ||||||||| | ||||||||| |||||||||||| |||||||    
T  959579 agttcaaaaggtcatgcatagcaatgttgtgtctcctaggtccatgaatgttgtgttta 959521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 17249407 - 17249472
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||||||||| |||| | | ||||||||||||| |||||||||||||| ||||||||| |||||||    
T  17249407 tacatagagtccaaaggattatgtatagcaatgttatgtctcctaagttcatgaatgttgtgttta 17249472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 32115723 - 32115658
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    |||| |||||||||||||||||| ||| |||||  |||||||||| |||||||||||| |||||||    
T  32115723 tacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta 32115658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 45779 - 45819
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtct 277  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  45779 tacatagagttcaaaaggtcatgcatagcaatgttatgtct 45819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 3137365 - 3137414
Alignment:
Q  253 ggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||| |||||||||  |||||||||| |||||||||||| |||||||    
T  3137365 ggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttta 3137414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 34554379 - 34554443
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||||||||| ||||||||||||||||||||   ||||||| ||||| ||||||| | |||||||    
T  34554379 tacatagagtttaaaaggtcatgtatagcaatatcatgtctcgtaagt-catgaattttgtgttta 34554443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 103111 - 103046
Alignment:
Q  237 tacatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgttta 302  Q
    ||||| ||| ||||||||||||| ||| |||||   ||||||||| |||||||||||| |||||||    
T  103111 tacatcgagctcaaaaggtcatgcataacaatgtcgtgtctcctaggtccatgaatgttgtgttta 103046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 49419 - 49347
Alignment:
Q  238 acatagagttcaaaaggtcatgtatagcaatgctatgtctcctaagtccatgaatgtcgtgtttatgagaatt 310  Q
    |||||||||||||| | ||||| ||| |||||  ||||||| || |||||||||||| || |||| |||||||    
T  49419 acatagagttcaaaggatcatgcataacaatgtcatgtctcttatgtccatgaatgtagtatttacgagaatt 49347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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