View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_38 (Length: 307)
Name: NF1433_low_38
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 29527191 - 29527458
Alignment:
| Q |
19 |
ggccctcaccagcaaaactttctttcacatattgagaagcaaagaaatggtcaaaacnnnnnnnntcttctccctcgtaatcttctcaactttcattttc |
118 |
Q |
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| T |
29527191 |
ggccctcaccagcaaaactttctttcacatattgagaagcaaagaaatggtcaaaacaaaaaaaatcttctccctcgtaatcttctcaactttcattctc |
29527290 |
T |
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| Q |
119 |
cattcactttccatctccacagacacattcctctacggtgggtgcacacaagaaaaatacaccccaacctacgaatccaacctaaactcactcctcacat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29527291 |
cattcactttccatctccacagacacattcctctacggtgggtgcacacaagaaaaatacaccccaacctacgaatccaacctaaactcactcctcacat |
29527390 |
T |
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| Q |
219 |
ccctaatcaactcagcaacctacacatcctacaataacttcaccatcatctcctcaaaccctaacgac |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29527391 |
ccctaatcaactcagcaacctacacatcctacaataacttcaccatcatctcctcaaaccctaacgac |
29527458 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 33327448 - 33327524
Alignment:
| Q |
186 |
cctacgaatccaacctaaactcactcctcacatccctaatcaactcagcaacctacacatcctacaataacttcacc |
262 |
Q |
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||||||| || |||||||| ||||||||||| || ||| |||| |||||||| ||| |||||||||| ||||||||| |
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| T |
33327448 |
cctacgagtcaaacctaaattcactcctcacttcactagtcaattcagcaacatactcatcctacaacaacttcacc |
33327524 |
T |
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