View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_39 (Length: 304)
Name: NF1433_low_39
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 98 - 296
Target Start/End: Original strand, 44579203 - 44579401
Alignment:
| Q |
98 |
aattgttggaattcaaatttgaatggttagttgcacatcaactataaaatatgtaactcatatttaatacattaaaattttgagtgcaaatacgatatca |
197 |
Q |
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| T |
44579203 |
aattgttggaattcaaatttgaatggttagttgcacatcaactataaaatatgtaactcatattaaatacattaaaattttgagtgcaaatacgatatca |
44579302 |
T |
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| Q |
198 |
atgtcttttgatgatcttaatctttagcgtgttgttactttcaaagttgttccacttgatgtgagtcaaagttgttacttcataatcgagggagatatt |
296 |
Q |
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| T |
44579303 |
atgtattttgatgatcttaatctttagcgtgttgttactttcgaagttgttcgacttgatgtgagccaaagttgttacttcataatcgagggagatatt |
44579401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44579094 - 44579169
Alignment:
| Q |
1 |
ttgttaaagaaacatttgtttttgggaacaaactgtgacgtaataattatgaaaaagtaacaatagtgaagaattg |
76 |
Q |
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| T |
44579094 |
ttgttaaataaacatatttttttgtgaacaaatagtgacgtattaataatgaaaaggtaacaatagtgatgaattg |
44579169 |
T |
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