View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_4 (Length: 650)
Name: NF1433_low_4
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 51823679 - 51823955
Alignment:
| Q |
7 |
taaattatactggaagaaagtcaggtgctatagttgtcaaagttttggtcattttgcatatgagtgaagaagcagcaaatcactaagagcaaatgctgat |
106 |
Q |
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| T |
51823679 |
taaattttactggaagaaagtcaggtgctaa--ttgtcaaagttttggtcattttgcatatgagtgaagaagcagcaaatcactaagagcaaatgctgat |
51823776 |
T |
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| Q |
107 |
tatgaagcactagttgttgaagaccactcaactgattaagatcatgtaaagattaaagttatgacttgaatgaaacttatgcaaaaaacttactctactt |
206 |
Q |
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| T |
51823777 |
tatgaagcactagttgttgaagaccactcaactgattaagatcatgtaaagattaaagttatgacttgaatgaaacttatgcaaaaaacttactctactt |
51823876 |
T |
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| Q |
207 |
ctagcaaaatgtcaataatcaactcatttatttgtatttcttttggcgttaaccctcgcataagtaaagtaagtcaata |
285 |
Q |
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| T |
51823877 |
ctagcaaaatgtcaataatcaactcatttatttgtatttcttttggcgttaaccctcgcataagtaaagtaagtcaata |
51823955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 404 - 634
Target Start/End: Original strand, 51824107 - 51824337
Alignment:
| Q |
404 |
atttcaaatcataattacacccctaagctaatagacctaggatagatctattatagccttggcactgcacaagttgtaatataaacnnnnnnnggttaaa |
503 |
Q |
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| T |
51824107 |
atttcaaatcataattacacccctaagctaatagacctaggatagatctattatagccttggcactgcacaagttgtaatataaacaaaaaaaggttaaa |
51824206 |
T |
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| Q |
504 |
ctacttaaaactgcaattgctctcatatttactgatatttacgttgatttagcacctaaaacaagtcattgagtggattcagtaggnnnnnnnnggagca |
603 |
Q |
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| T |
51824207 |
ctacttaaaactgcaattgctctcatatttactgatatttacgttgatttagcacctaaaacaagtcattgagtggattcagtaggttttttttggagca |
51824306 |
T |
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| Q |
604 |
gagtcgaaatcacttctttgatatggtgatt |
634 |
Q |
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| T |
51824307 |
gagtcgaaatcacttctttgatatggtgatt |
51824337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 51823993 - 51824042
Alignment:
| Q |
290 |
tcaaatttctcaacttaatcttaaactggtctacgggtcaaatggaggac |
339 |
Q |
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| T |
51823993 |
tcaaatttctcaacttaatcttaaactggtctacgggtcaaatggaggac |
51824042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 585
Target Start/End: Original strand, 51827450 - 51827541
Alignment:
| Q |
497 |
ggttaaactacttaaaactgcaattgctctcata---tttactgatatttacgttgatttagcacctaaaacaagtcattgagtggattcag |
585 |
Q |
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| T |
51827450 |
ggttaaactatttaacactgcgatttctcttatactatttactaatatttacgttgatttagcacctaacacaagccatggagcggattcag |
51827541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 51834434 - 51834466
Alignment:
| Q |
45 |
aaagttttggtcattttgcatatgagtgaagaa |
77 |
Q |
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| T |
51834434 |
aaagttttggtcattttgcatatgagtgaagaa |
51834466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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